30054.m000809 (Ricinus communis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 30054.m000809 T283856_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY

RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.798 0.817
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH

DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.798 0.817
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.766 0.839
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.766 0.839
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH

DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.760 0.828
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY

RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.760 0.828
MYB106
M11040_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.735 0.753
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH

DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.715 0.742
MYB55
M00876_2.00
Arabidopsis thaliana
ACCWAMCD

HGKTWGGT
PBM
Franco-Zorrilla et al.(2014)
MYB55
0.692 0.677
MYB55
M07102_2.00
Arabidopsis thaliana
HNNNHBYAMCWAMCD

HGKTWGKTRVDNNND
Dap-seq
OMalley et al.(2016)
MYB55_colamp_a
0.692 0.677
MYB55
M07103_2.00
Arabidopsis thaliana
NYNYAMCHACCRHH

DDYGGTDGKTRNRN
Dap-seq
OMalley et al.(2016)
MYB55_col
0.692 0.677
MYB39
M07106_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH

DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_col_a
0.688 0.785
MYB39
M07107_2.00
Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH

DNDDDDDDDWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_colamp_a
0.688 0.785
ATY53
M07078_2.00
Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN

NNNNNNNNDDHGKTWGGTRVR
Dap-seq
OMalley et al.(2016)
MYB67_col_a
0.685 0.699
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC

GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.679 0.796
MYB49
M07140_2.00
Arabidopsis thaliana
HDBBYYACCWAMYWH

DWRKTWGGTRRVVHD
Dap-seq
OMalley et al.(2016)
MYB49_col_a
0.667 0.774
MYB49
M07141_2.00
Arabidopsis thaliana
NYYYACCTAMYWHN

NDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB49_colamp_a
0.667 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30054.m000809 Myb 15 62
30054.m000809 Myb 68 113

Links

Other Myb/SANT family TFs
Other Ricinus communis TFs

827 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29933.m001454 Ricinus communis 29933.m001454 N 0.000
cassava5261.m1 Manihot esculenta cassava5261.m1 N 0.000
cassava5263.m1 Manihot esculenta cassava5263.m1 N 0.000
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I 0.000
Eucgr.D00037 Eucalyptus grandis Eucgr.D00037 N 0.000
Eucgr.D00040 Eucalyptus grandis Eucgr.D00040 I 0.000
Eucgr.D00042 Eucalyptus grandis Eucgr.D00042 I 0.000
Eucgr.D00044 Eucalyptus grandis Eucgr.D00044 N 0.000
Eucgr.D00050 Eucalyptus grandis Eucgr.D00050 N 0.000
evm.TU.supercontig_27.156 Carica papaya evm.TU.supercontig_27.156 N 0.000
gene30736-v1.0-hybrid Fragaria vesca gene30736-v1.0-hybrid N 0.000
GLYMA06G45554 Glycine max GLYMA06G45554 I 0.000
GLYMA12G11330 Glycine max GLYMA12G11330 I 0.000
Gorai.010G148300 Gossypium raimondii Gorai.010G148300 N 0.000
Gorai.011G021300 Gossypium raimondii Gorai.011G021300 N 0.000
Gorai.013G143000 Gossypium raimondii Gorai.013G143000 N 0.000
Gorai.013G143200 Gossypium raimondii Gorai.013G143200 I 0.000
Lus10022021.g Linum usitatissimum Lus10022021.g I 0.000
Lus10033738.g Linum usitatissimum Lus10033738.g N 0.000
MDP0000131822 Malus domestica MDP0000131822 I 0.000
MDP0000155426 Malus domestica MDP0000155426 I 0.000
MDP0000289283 Malus domestica MDP0000289283 I 0.000
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N 0.000
Pm009880 Prunus mume Pm009880 N 0.000
Pm015302 Prunus mume Pm015302 N 0.000
POPTR_0004s02570 Populus trichocarpa POPTR_0004s02570 I 0.000
POPTR_0011s04010 Populus trichocarpa POPTR_0011s04010 N 0.000
POPTR_0011s04020 Populus trichocarpa POPTR_0011s04020 N 0.000
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I 0.000
PRUPE_ppa015081mg Prunus persica PRUPE_ppa015081mg N 0.000
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N 0.000
SapurV1A.0028s0640 Salix purpurea SapurV1A.0028s0640 N 0.000
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N 0.000
SapurV1A.0417s0130 Salix purpurea SapurV1A.0417s0130 I 0.000
TCM_030020 Theobroma cacao TCM_030020 I 0.000
TCM_033015 Theobroma cacao TCM_033015 N 0.000
TCM_033016 Theobroma cacao TCM_033016 N 0.000
VIT_00s0203g00170 Vitis vinifera VIT_00s0203g00170 N 0.000