cassava12645.valid.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava12645.valid.m1 T283993_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.741 0.879
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.676 0.750
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.676 0.750
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.674 0.780
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava12645.valid.m1 Myb 59 97
cassava12645.valid.m1 Myb 103 149
cassava12645.valid.m1 Myb 155 200

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm002704 Prunus mume Pm002704 I 0.849
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.849
29846.m000184 Ricinus communis 29846.m000184 I 0.847
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.844
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.844
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.836
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.836
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.829
TCM_021936 Theobroma cacao TCM_021936 I 0.829
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.823
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.823
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.822
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.822
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.818
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.818
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.806
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.806
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.805
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.804
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.803
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.802
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.802
Bo1g144510 Brassica oleracea Bo1g144510 I 0.801
Bra034067 Brassica rapa Bra034067 I 0.801
MDP0000219581 Malus domestica MDP0000219581 I 0.799
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.795
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.788
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.788
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.787
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.787
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.784
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.784
MYB3R-2 Oryza sativa OS01G0841500 I 0.784
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.784
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.784
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.784
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.778
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.778
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.778
PK11664.1 Cannabis sativa PK11664.1 I 0.776
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.775
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.775
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.774
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.772
Cla018173 Citrullus lanatus Cla018173 I 0.772
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.771
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.769
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.767
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.767
mgf019610m Mimulus guttatus mgf019610m I 0.765
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.760
Si000842m.g Setaria italica Si000842m.g I 0.760
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.755
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.745
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.745
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.745
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.741
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.741
Bo5g139340 Brassica oleracea Bo5g139340 I 0.741
Bra029762 Brassica rapa Bra029762 I 0.740
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.736
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.731
OS05G0459000 Oryza sativa OS05G0459000 I 0.722
ORGLA05G0166300 Oryza glaberrima ORGLA05G0166300 I 0.722
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.717
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.714
Bra009597 Brassica rapa Bra009597 I 0.713
GLYMA03G19470 Glycine max GLYMA03G19470 I 0.704
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.698
Bo9g184660 Brassica oleracea Bo9g184660 I 0.697
Bo3g062020 Brassica oleracea Bo3g062020 N 0.691
OB01G45570 Oryza brachyantha OB01G45570 I 0.683
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.681
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.681
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.681
OBART05G19200 Oryza barthii OBART05G19200 I 0.681
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.681
Ca_14925 Cicer arietinum Ca_14925 I 0.680
Ca_21127 Cicer arietinum Ca_21127 I 0.679
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.678
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.676
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.676
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.676
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.676
Bra001311 Brassica rapa Bra001311 N 0.676
29794.m003447 Ricinus communis 29794.m003447 I 0.675
PK12011.1 Cannabis sativa PK12011.1 D 0.674
Cla023357 Citrullus lanatus Cla023357 I 0.673
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.673
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.673
Bo3g171130 Brassica oleracea Bo3g171130 I 0.671
Si021484m.g Setaria italica Si021484m.g I 0.671
Bra034531 Brassica rapa Bra034531 I 0.671
MDP0000295807 Malus domestica MDP0000295807 I 0.671
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.670
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.669
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.669
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.667
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.665
Bo1g010040 Brassica oleracea Bo1g010040 I 0.665
Bo7g115810 Brassica oleracea Bo7g115810 I 0.664
MDP0000179225 Malus domestica MDP0000179225 I 0.664
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.664
PDK_20s1314361g001 Phoenix dactylifera PDK_20s1314361g001 N 0.663
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.662
TCM_047091 Theobroma cacao TCM_047091 I 0.662
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.662
Cla022565 Citrullus lanatus Cla022565 I 0.662
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.662
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.662
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.662