CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava13407.valid.m1
(
Manihot esculenta
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
cassava13407.valid.m1
T284003_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN
NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.909
1.000
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS
SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.909
1.000
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN
NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.909
1.000
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH
DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.909
1.000
Q5IWM2_WHEAT
M11059_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB80_01
0.802
0.872
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN
NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.772
0.809
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.772
0.809
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB
VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.772
0.809
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN
NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.772
0.809
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN
NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.743
0.745
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN
NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.737
0.723
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN
NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.737
0.723
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN
NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.737
0.723
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.735
0.766
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.735
0.766
PHL12
M01077_2.00
Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN
PBM
Sullivan et al.(2014)
pTH7098
0.730
0.809
PHL12
M07079_2.00
Arabidopsis thaliana
RGAATATTCYYTWN
NWARRGAATATTCY
Dap-seq
OMalley et al.(2016)
At3g12730_col_a
0.730
0.809
PHL12
M07080_2.00
Arabidopsis thaliana
NNRAAKATTCBHHN
NDDVGAATMTTYNN
Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a
0.730
0.809
AT2G20400
M07046_2.00
Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB
VGAATATKCYWTDNNNHHHBNNDNHNNHN
Dap-seq
OMalley et al.(2016)
AT2G20400_col_a
0.704
0.809
AT2G20400
M07047_2.00
Arabidopsis thaliana
RDRGAATATTCBNWD
HWNVGAATATTCYHY
Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a
0.704
0.809
PHL6
M02295_2.00
Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN
PBM
Weirauch et al.(2014)
pTH7071
0.690
0.745
PHL6
M07083_2.00
Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN
Dap-seq
OMalley et al.(2016)
At3g13040_col_b
0.690
0.745
PHL11
M07134_2.00
Arabidopsis thaliana
NNRAAKATTCYHHN
NDDRGAATMTTYNN
Dap-seq
OMalley et al.(2016)
AT5G45580_col_a
0.688
0.787
PHL11
M07135_2.00
Arabidopsis thaliana
NRAAKATTCYHHNN
NNDDRGAATMTTYN
Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a
0.688
0.787
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.685
0.787
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.685
0.787
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava13407.valid.m1
Myb
51
102
RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Manihot esculenta
TFs
950 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28405.m000015
Ricinus communis
28405.m000015
N
0.000
30170.m014085
Ricinus communis
30170.m014085
N
0.000
Al_scaffold_0006_3588
Arabidopsis lyrata
Al_scaffold_0006_3588
N
0.000
Aquca_010_00556
Aquilegia coerulea
Aquca_010_00556
N
0.000
AT4G05170
Arabidopsis thaliana
AT4G05170
N
0.000
BHLH110
Arabidopsis thaliana
AT1G27660
N
0.000
BHLH154
Arabidopsis thaliana
AT2G31730
N
0.000
Bo3g026410
Brassica oleracea
Bo3g026410
N
0.000
Bo4g049510
Brassica oleracea
Bo4g049510
N
0.000
Bo9g076250
Brassica oleracea
Bo9g076250
N
0.000
Bostr.26675s0184
Boechera stricta
Bostr.26675s0184
N
0.000
Bostr.2983s0058
Boechera stricta
Bostr.2983s0058
N
0.000
Bra029562
Brassica rapa
Bra029562
N
0.000
Cagra.1981s0012
Capsella grandiflora
Cagra.1981s0012
N
0.000
Carubv10003683m.g
Capsella rubella
Carubv10003683m.g
N
0.000
cassava21180.m1
Manihot esculenta
cassava21180.m1
N
0.000
cassava36740.valid.m1
Manihot esculenta
cassava36740.valid.m1
N
0.000
cassava37772.valid.m1
Manihot esculenta
cassava37772.valid.m1
N
0.000
cassava37773.valid.m1
Manihot esculenta
cassava37773.valid.m1
N
0.000
cassava42530.valid.m1
Manihot esculenta
cassava42530.valid.m1
N
0.000
Ca_04928
Cicer arietinum
Ca_04928
N
0.000
chr5.CM0200.1030.nc
Lotus japonicus
chr5.CM0200.1030.nc
N
0.000
Ciclev10001291m.g
Citrus clementina
Ciclev10001291m.g
N
0.000
Cla011068
Citrullus lanatus
Cla011068
N
0.000
Cla021101
Citrullus lanatus
Cla021101
N
0.000
Cucsa.095280
Cucumis sativus
Cucsa.095280
N
0.000
Cucsa.342640
Cucumis sativus
Cucsa.342640
N
0.000
Cucsa.359290
Cucumis sativus
Cucsa.359290
N
0.000
Eucgr.D00881
Eucalyptus grandis
Eucgr.D00881
N
0.000
evm.TU.supercontig_99.32
Carica papaya
evm.TU.supercontig_99.32
N
0.000
fgenesh2_kg.1__2924__AT1G27660.1
Arabidopsis lyrata
fgenesh2_kg.1__2924__AT1G27660.1
N
0.000
gene11847-v1.0-hybrid
Fragaria vesca
gene11847-v1.0-hybrid
N
0.000
Gorai.009G199600
Gossypium raimondii
Gorai.009G199600
N
0.000
Gorai.011G135700
Gossypium raimondii
Gorai.011G135700
N
0.000
GSMUA_Achr6G24280_001
Musa acuminata
GSMUA_Achr6G24280_001
N
0.000
LjSGA_021413.2
Lotus japonicus
LjSGA_021413.2
N
0.000
MDP0000168695
Malus domestica
MDP0000168695
N
0.000
MDP0000262020
Malus domestica
MDP0000262020
N
0.000
MDP0000687814
Malus domestica
MDP0000687814
N
0.000
mgf013138m
Mimulus guttatus
mgf013138m
N
0.000
MLOC_57076
Hordeum vulgare
MLOC_57076
N
0.000
MTR_3g112170
Medicago truncatula
MTR_3g112170
N
0.000
OLONG_021979
Oryza longistaminata
OLONG_021979
N
0.000
OPUNC01G00360
Oryza punctata
OPUNC01G00360
N
0.000
orange1.1g035657m.g
Citrus sinensis
orange1.1g035657m.g
N
0.000
PDK_20s1709901g001
Phoenix dactylifera
PDK_20s1709901g001
N
0.000
PGSC0003DMG400003746
Solanum tuberosum
PGSC0003DMG400003746
N
0.000
Pm005865
Prunus mume
Pm005865
N
0.000
Pm007388
Prunus mume
Pm007388
N
0.000
POPTR_0002s03380
Populus trichocarpa
POPTR_0002s03380
N
0.000
POPTR_0005s25240
Populus trichocarpa
POPTR_0005s25240
N
0.000
POPTR_0013s13050
Populus trichocarpa
POPTR_0013s13050
N
0.000
POPTR_0019s12530
Populus trichocarpa
POPTR_0019s12530
N
0.000
PRUPE_ppa005486mg
Prunus persica
PRUPE_ppa005486mg
N
0.000
PRUPE_ppa012528mg
Prunus persica
PRUPE_ppa012528mg
N
0.000
SapurV1A.0006s0290
Salix purpurea
SapurV1A.0006s0290
N
0.000
SapurV1A.0188s0290
Salix purpurea
SapurV1A.0188s0290
N
0.000
SapurV1A.0388s0180
Salix purpurea
SapurV1A.0388s0180
N
0.000
Sb03g008830
Sorghum bicolor
Sb03g008830
N
0.000
Solyc02g084880.2
Solanum lycopersicum
Solyc02g084880.2
N
0.000
Solyc04g080710.2
Solanum lycopersicum
Solyc04g080710.2
N
0.000
TCM_019871
Theobroma cacao
TCM_019871
N
0.000
TCM_034098
Theobroma cacao
TCM_034098
N
0.000
Thhalv10017421m.g
Eutrema salsugineum
Thhalv10017421m.g
N
0.000
Thhalv10029319m.g
Eutrema salsugineum
Thhalv10029319m.g
N
0.000
VIT_05s0094g00480
Vitis vinifera
VIT_05s0094g00480
N
0.000
VIT_18s0001g12970
Vitis vinifera
VIT_18s0001g12970
N
0.000