cassava13407.valid.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava13407.valid.m1 T284003_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN

NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.909 1.000
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS

SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.909 1.000
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN

NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.909 1.000
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH

DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.909 1.000
Q5IWM2_WHEAT
M11059_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB80_01
0.802 0.872
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN

NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.772 0.809
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.772 0.809
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB

VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.772 0.809
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN

NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.772 0.809
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN

NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.743 0.745
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN

NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.737 0.723
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN

NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.737 0.723
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN

NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.737 0.723
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.735 0.766
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN

NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.735 0.766
PHL12
M01077_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Sullivan et al.(2014)
pTH7098
0.730 0.809
PHL12
M07079_2.00
Arabidopsis thaliana
RGAATATTCYYTWN

NWARRGAATATTCY
Dap-seq
OMalley et al.(2016)
At3g12730_col_a
0.730 0.809
PHL12
M07080_2.00
Arabidopsis thaliana
NNRAAKATTCBHHN

NDDVGAATMTTYNN
Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a
0.730 0.809
AT2G20400
M07046_2.00
Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB

VGAATATKCYWTDNNNHHHBNNDNHNNHN
Dap-seq
OMalley et al.(2016)
AT2G20400_col_a
0.704 0.809
AT2G20400
M07047_2.00
Arabidopsis thaliana
RDRGAATATTCBNWD

HWNVGAATATTCYHY
Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a
0.704 0.809
PHL6
M02295_2.00
Arabidopsis thaliana
NNWKATNCBN

NVGNATMWNN
PBM
Weirauch et al.(2014)
pTH7071
0.690 0.745
PHL6
M07083_2.00
Arabidopsis thaliana
NDGAAAACH

DGTTTTCHN
Dap-seq
OMalley et al.(2016)
At3g13040_col_b
0.690 0.745
PHL11
M07134_2.00
Arabidopsis thaliana
NNRAAKATTCYHHN

NDDRGAATMTTYNN
Dap-seq
OMalley et al.(2016)
AT5G45580_col_a
0.688 0.787
PHL11
M07135_2.00
Arabidopsis thaliana
NRAAKATTCYHHNN

NNDDRGAATMTTYN
Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a
0.688 0.787
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.685 0.787
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.685 0.787
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava13407.valid.m1 Myb 51 102

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

950 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28405.m000015 Ricinus communis 28405.m000015 N 0.000
30170.m014085 Ricinus communis 30170.m014085 N 0.000
Al_scaffold_0006_3588 Arabidopsis lyrata Al_scaffold_0006_3588 N 0.000
Aquca_010_00556 Aquilegia coerulea Aquca_010_00556 N 0.000
AT4G05170 Arabidopsis thaliana AT4G05170 N 0.000
BHLH110 Arabidopsis thaliana AT1G27660 N 0.000
BHLH154 Arabidopsis thaliana AT2G31730 N 0.000
Bo3g026410 Brassica oleracea Bo3g026410 N 0.000
Bo4g049510 Brassica oleracea Bo4g049510 N 0.000
Bo9g076250 Brassica oleracea Bo9g076250 N 0.000
Bostr.26675s0184 Boechera stricta Bostr.26675s0184 N 0.000
Bostr.2983s0058 Boechera stricta Bostr.2983s0058 N 0.000
Bra029562 Brassica rapa Bra029562 N 0.000
Cagra.1981s0012 Capsella grandiflora Cagra.1981s0012 N 0.000
Carubv10003683m.g Capsella rubella Carubv10003683m.g N 0.000
cassava21180.m1 Manihot esculenta cassava21180.m1 N 0.000
cassava36740.valid.m1 Manihot esculenta cassava36740.valid.m1 N 0.000
cassava37772.valid.m1 Manihot esculenta cassava37772.valid.m1 N 0.000
cassava37773.valid.m1 Manihot esculenta cassava37773.valid.m1 N 0.000
cassava42530.valid.m1 Manihot esculenta cassava42530.valid.m1 N 0.000
Ca_04928 Cicer arietinum Ca_04928 N 0.000
chr5.CM0200.1030.nc Lotus japonicus chr5.CM0200.1030.nc N 0.000
Ciclev10001291m.g Citrus clementina Ciclev10001291m.g N 0.000
Cla011068 Citrullus lanatus Cla011068 N 0.000
Cla021101 Citrullus lanatus Cla021101 N 0.000
Cucsa.095280 Cucumis sativus Cucsa.095280 N 0.000
Cucsa.342640 Cucumis sativus Cucsa.342640 N 0.000
Cucsa.359290 Cucumis sativus Cucsa.359290 N 0.000
Eucgr.D00881 Eucalyptus grandis Eucgr.D00881 N 0.000
evm.TU.supercontig_99.32 Carica papaya evm.TU.supercontig_99.32 N 0.000
fgenesh2_kg.1__2924__AT1G27660.1 Arabidopsis lyrata fgenesh2_kg.1__2924__AT1G27660.1 N 0.000
gene11847-v1.0-hybrid Fragaria vesca gene11847-v1.0-hybrid N 0.000
Gorai.009G199600 Gossypium raimondii Gorai.009G199600 N 0.000
Gorai.011G135700 Gossypium raimondii Gorai.011G135700 N 0.000
GSMUA_Achr6G24280_001 Musa acuminata GSMUA_Achr6G24280_001 N 0.000
LjSGA_021413.2 Lotus japonicus LjSGA_021413.2 N 0.000
MDP0000168695 Malus domestica MDP0000168695 N 0.000
MDP0000262020 Malus domestica MDP0000262020 N 0.000
MDP0000687814 Malus domestica MDP0000687814 N 0.000
mgf013138m Mimulus guttatus mgf013138m N 0.000
MLOC_57076 Hordeum vulgare MLOC_57076 N 0.000
MTR_3g112170 Medicago truncatula MTR_3g112170 N 0.000
OLONG_021979 Oryza longistaminata OLONG_021979 N 0.000
OPUNC01G00360 Oryza punctata OPUNC01G00360 N 0.000
orange1.1g035657m.g Citrus sinensis orange1.1g035657m.g N 0.000
PDK_20s1709901g001 Phoenix dactylifera PDK_20s1709901g001 N 0.000
PGSC0003DMG400003746 Solanum tuberosum PGSC0003DMG400003746 N 0.000
Pm005865 Prunus mume Pm005865 N 0.000
Pm007388 Prunus mume Pm007388 N 0.000
POPTR_0002s03380 Populus trichocarpa POPTR_0002s03380 N 0.000
POPTR_0005s25240 Populus trichocarpa POPTR_0005s25240 N 0.000
POPTR_0013s13050 Populus trichocarpa POPTR_0013s13050 N 0.000
POPTR_0019s12530 Populus trichocarpa POPTR_0019s12530 N 0.000
PRUPE_ppa005486mg Prunus persica PRUPE_ppa005486mg N 0.000
PRUPE_ppa012528mg Prunus persica PRUPE_ppa012528mg N 0.000
SapurV1A.0006s0290 Salix purpurea SapurV1A.0006s0290 N 0.000
SapurV1A.0188s0290 Salix purpurea SapurV1A.0188s0290 N 0.000
SapurV1A.0388s0180 Salix purpurea SapurV1A.0388s0180 N 0.000
Sb03g008830 Sorghum bicolor Sb03g008830 N 0.000
Solyc02g084880.2 Solanum lycopersicum Solyc02g084880.2 N 0.000
Solyc04g080710.2 Solanum lycopersicum Solyc04g080710.2 N 0.000
TCM_019871 Theobroma cacao TCM_019871 N 0.000
TCM_034098 Theobroma cacao TCM_034098 N 0.000
Thhalv10017421m.g Eutrema salsugineum Thhalv10017421m.g N 0.000
Thhalv10029319m.g Eutrema salsugineum Thhalv10029319m.g N 0.000
VIT_05s0094g00480 Vitis vinifera VIT_05s0094g00480 N 0.000
VIT_18s0001g12970 Vitis vinifera VIT_18s0001g12970 N 0.000