CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

cassava13407.valid.m1 *(Manihot esculenta)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	cassava13407.valid.m1	T284003_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PHL7 M02292_2.00	Arabidopsis thaliana	NWGATDCBNN	NNVGHATCWN	PBM Weirauch et al.(2014) pTH7253	0.909	1.000
PK10342.1 M02351_2.00	Cannabis sativa	WAGATKCS	SGMATCTW	PBM Weirauch et al.(2014) pTH9489	0.909	1.000
PHL7 M07040_2.00	Arabidopsis thaliana	DRNAKATTCBNHNNN	NNNDNVGAATMTNYH	Dap-seq OMalley et al.(2016) At2g01060_colamp_a	0.909	1.000
PHL7 M07041_2.00	Arabidopsis thaliana	VGAATATTCBNHH	DDNVGAATATTCB	Dap-seq OMalley et al.(2016) At2g01060_col	0.909	1.000
Q5IWM2_WHEAT M11059_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MYB80_01	0.802	0.872
AT3G24120 M00729_2.00	Arabidopsis thaliana	NNKATDCBNN	NNVGHATMNN	PBM Chang et al.(2013) pTH7086	0.772	0.809
UNE16 M01270_2.00	Arabidopsis thaliana	NWKATTCBNN	NNVGAATMWN	PBM Lambert et al.(2019) pTH9967	0.772	0.809
AT3G24120 M07085_2.00	Arabidopsis thaliana	HAKATTCB	VGAATMTD	Dap-seq OMalley et al.(2016) At3g24120_col_a	0.772	0.809
AT3G24120 M07086_2.00	Arabidopsis thaliana	NDRAAKATTCBHHN	NDDVGAATMTTYHN	Dap-seq OMalley et al.(2016) At3g24120_colamp_a	0.772	0.809
MYR1 M02309_2.00	Arabidopsis thaliana	NKATNCBNNN	NNNVGNATMN	PBM Weirauch et al.(2014) pTH8859	0.743	0.745
MYR2 M02294_2.00	Arabidopsis thaliana	NKATDCBNN	NNVGHATMN	PBM Weirauch et al.(2014) pTH7097	0.737	0.723
MYR2 M07063_2.00	Arabidopsis thaliana	NNDAAKATTCYHHN	NDDRGAATMTTHNN	Dap-seq OMalley et al.(2016) At3g04030_col_a	0.737	0.723
MYR2 M07064_2.00	Arabidopsis thaliana	VRAAKATTCBHWNNN	NNNWDVGAATMTTYB	Dap-seq OMalley et al.(2016) At3g04030_colamp_a	0.737	0.723
PHL1 M02310_2.00	Arabidopsis thaliana	NWKATNCBNN	NNVGNATMWN	PBM Weirauch et al.(2014) pTH7122	0.735	0.766
PHL1 M07132_2.00	Arabidopsis thaliana	MDRGAATATTCBNWN	NWNVGAATATTCYHK	Dap-seq OMalley et al.(2016) At5g29000_col_a	0.735	0.766
PHL12 M01077_2.00	Arabidopsis thaliana	NWKATTCBNN	NNVGAATMWN	PBM Sullivan et al.(2014) pTH7098	0.730	0.809
PHL12 M07079_2.00	Arabidopsis thaliana	RGAATATTCYYTWN	NWARRGAATATTCY	Dap-seq OMalley et al.(2016) At3g12730_col_a	0.730	0.809
PHL12 M07080_2.00	Arabidopsis thaliana	NNRAAKATTCBHHN	NDDVGAATMTTYNN	Dap-seq OMalley et al.(2016) At3g12730_colamp_a	0.730	0.809
AT2G20400 M07046_2.00	Arabidopsis thaliana	NDNNDNHNNVDDDNNNHAWRGMATATTCB	VGAATATKCYWTDNNNHHHBNNDNHNNHN	Dap-seq OMalley et al.(2016) AT2G20400_col_a	0.704	0.809
AT2G20400 M07047_2.00	Arabidopsis thaliana	RDRGAATATTCBNWD	HWNVGAATATTCYHY	Dap-seq OMalley et al.(2016) AT2G20400_colamp_a	0.704	0.809
PHL6 M02295_2.00	Arabidopsis thaliana	NNWKATNCBN	NVGNATMWNN	PBM Weirauch et al.(2014) pTH7071	0.690	0.745
PHL6 M07083_2.00	Arabidopsis thaliana	NDGAAAACH	DGTTTTCHN	Dap-seq OMalley et al.(2016) At3g13040_col_b	0.690	0.745
PHL11 M07134_2.00	Arabidopsis thaliana	NNRAAKATTCYHHN	NDDRGAATMTTYNN	Dap-seq OMalley et al.(2016) AT5G45580_col_a	0.688	0.787
PHL11 M07135_2.00	Arabidopsis thaliana	NRAAKATTCYHHNN	NNDDRGAATMTTYN	Dap-seq OMalley et al.(2016) AT5G45580_colamp_a	0.688	0.787
PHR1 M02302_2.00	Arabidopsis thaliana	NWKATNCBNN	NNVGNATMWN	PBM Weirauch et al.(2014) pTH7249	0.685	0.787
PHR1 M02329_2.00	Oryza sativa	NWKATNCBNN	NNVGNATMWN	PBM Weirauch et al.(2014) pTH7755	0.685	0.787
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
cassava13407.valid.m1	Myb	51	102	RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR

Links
Other Myb/SANT family TFs
Other *Manihot esculenta* TFs

950 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
28405.m000015	Ricinus communis	28405.m000015	N	0.000
30170.m014085	Ricinus communis	30170.m014085	N	0.000
Al_scaffold_0006_3588	Arabidopsis lyrata	Al_scaffold_0006_3588	N	0.000
Aquca_010_00556	Aquilegia coerulea	Aquca_010_00556	N	0.000
AT4G05170	Arabidopsis thaliana	AT4G05170	N	0.000
BHLH110	Arabidopsis thaliana	AT1G27660	N	0.000
BHLH154	Arabidopsis thaliana	AT2G31730	N	0.000
Bo3g026410	Brassica oleracea	Bo3g026410	N	0.000
Bo4g049510	Brassica oleracea	Bo4g049510	N	0.000
Bo9g076250	Brassica oleracea	Bo9g076250	N	0.000
Bostr.26675s0184	Boechera stricta	Bostr.26675s0184	N	0.000
Bostr.2983s0058	Boechera stricta	Bostr.2983s0058	N	0.000
Bra029562	Brassica rapa	Bra029562	N	0.000
Cagra.1981s0012	Capsella grandiflora	Cagra.1981s0012	N	0.000
Carubv10003683m.g	Capsella rubella	Carubv10003683m.g	N	0.000
cassava21180.m1	Manihot esculenta	cassava21180.m1	N	0.000
cassava36740.valid.m1	Manihot esculenta	cassava36740.valid.m1	N	0.000
cassava37772.valid.m1	Manihot esculenta	cassava37772.valid.m1	N	0.000
cassava37773.valid.m1	Manihot esculenta	cassava37773.valid.m1	N	0.000
cassava42530.valid.m1	Manihot esculenta	cassava42530.valid.m1	N	0.000
Ca_04928	Cicer arietinum	Ca_04928	N	0.000
chr5.CM0200.1030.nc	Lotus japonicus	chr5.CM0200.1030.nc	N	0.000
Ciclev10001291m.g	Citrus clementina	Ciclev10001291m.g	N	0.000
Cla011068	Citrullus lanatus	Cla011068	N	0.000
Cla021101	Citrullus lanatus	Cla021101	N	0.000
Cucsa.095280	Cucumis sativus	Cucsa.095280	N	0.000
Cucsa.342640	Cucumis sativus	Cucsa.342640	N	0.000
Cucsa.359290	Cucumis sativus	Cucsa.359290	N	0.000
Eucgr.D00881	Eucalyptus grandis	Eucgr.D00881	N	0.000
evm.TU.supercontig_99.32	Carica papaya	evm.TU.supercontig_99.32	N	0.000
fgenesh2_kg.1__2924__AT1G27660.1	Arabidopsis lyrata	fgenesh2_kg.1__2924__AT1G27660.1	N	0.000
gene11847-v1.0-hybrid	Fragaria vesca	gene11847-v1.0-hybrid	N	0.000
Gorai.009G199600	Gossypium raimondii	Gorai.009G199600	N	0.000
Gorai.011G135700	Gossypium raimondii	Gorai.011G135700	N	0.000
GSMUA_Achr6G24280_001	Musa acuminata	GSMUA_Achr6G24280_001	N	0.000
LjSGA_021413.2	Lotus japonicus	LjSGA_021413.2	N	0.000
MDP0000168695	Malus domestica	MDP0000168695	N	0.000
MDP0000262020	Malus domestica	MDP0000262020	N	0.000
MDP0000687814	Malus domestica	MDP0000687814	N	0.000
mgf013138m	Mimulus guttatus	mgf013138m	N	0.000
MLOC_57076	Hordeum vulgare	MLOC_57076	N	0.000
MTR_3g112170	Medicago truncatula	MTR_3g112170	N	0.000
OLONG_021979	Oryza longistaminata	OLONG_021979	N	0.000
OPUNC01G00360	Oryza punctata	OPUNC01G00360	N	0.000
orange1.1g035657m.g	Citrus sinensis	orange1.1g035657m.g	N	0.000
PDK_20s1709901g001	Phoenix dactylifera	PDK_20s1709901g001	N	0.000
PGSC0003DMG400003746	Solanum tuberosum	PGSC0003DMG400003746	N	0.000
Pm005865	Prunus mume	Pm005865	N	0.000
Pm007388	Prunus mume	Pm007388	N	0.000
POPTR_0002s03380	Populus trichocarpa	POPTR_0002s03380	N	0.000
POPTR_0005s25240	Populus trichocarpa	POPTR_0005s25240	N	0.000
POPTR_0013s13050	Populus trichocarpa	POPTR_0013s13050	N	0.000
POPTR_0019s12530	Populus trichocarpa	POPTR_0019s12530	N	0.000
PRUPE_ppa005486mg	Prunus persica	PRUPE_ppa005486mg	N	0.000
PRUPE_ppa012528mg	Prunus persica	PRUPE_ppa012528mg	N	0.000
SapurV1A.0006s0290	Salix purpurea	SapurV1A.0006s0290	N	0.000
SapurV1A.0188s0290	Salix purpurea	SapurV1A.0188s0290	N	0.000
SapurV1A.0388s0180	Salix purpurea	SapurV1A.0388s0180	N	0.000
Sb03g008830	Sorghum bicolor	Sb03g008830	N	0.000
Solyc02g084880.2	Solanum lycopersicum	Solyc02g084880.2	N	0.000
Solyc04g080710.2	Solanum lycopersicum	Solyc04g080710.2	N	0.000
TCM_019871	Theobroma cacao	TCM_019871	N	0.000
TCM_034098	Theobroma cacao	TCM_034098	N	0.000
Thhalv10017421m.g	Eutrema salsugineum	Thhalv10017421m.g	N	0.000
Thhalv10029319m.g	Eutrema salsugineum	Thhalv10029319m.g	N	0.000
VIT_05s0094g00480	Vitis vinifera	VIT_05s0094g00480	N	0.000
VIT_18s0001g12970	Vitis vinifera	VIT_18s0001g12970	N	0.000

cassava13407.valid.m1 (Manihot esculenta) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

950 Related TFs

cassava13407.valid.m1 **(Manihot esculenta)
Myb/SANT**