cassava32672.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava32672.m1 T284186_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.671 0.688
MYB23
M07133_2.00
Arabidopsis thaliana
HCAACWAHHHH

DDDDTWGTTGD
Dap-seq
OMalley et al.(2016)
MYB23_col_a
0.666 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava32672.m1 Myb 12 59
cassava32672.m1 Myb 65 110

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pm027586 Prunus mume Pm027586 I 0.879
MDP0000264051 Malus domestica MDP0000264051 I 0.872
PRUPE_ppa016532mg Prunus persica PRUPE_ppa016532mg I 0.869
evm.TU.supercontig_46.32 Carica papaya evm.TU.supercontig_46.32 I 0.866
PK01088.1 Cannabis sativa PK01088.1 I 0.863
Cla016951 Citrullus lanatus Cla016951 I 0.860
MDP0000167314 Malus domestica MDP0000167314 I 0.859
POPTR_0018s12780 Populus trichocarpa POPTR_0018s12780 N 0.858
gene31098-v1.0-hybrid Fragaria vesca gene31098-v1.0-hybrid I 0.857
Gorai.001G044000 Gossypium raimondii Gorai.001G044000 I 0.853
Eucgr.C01374 Eucalyptus grandis Eucgr.C01374 I 0.849
TCM_038131 Theobroma cacao TCM_038131 I 0.842
Cagra.0084s0008 Capsella grandiflora Cagra.0084s0008 I 0.838
Carubv10028642m.g Capsella rubella Carubv10028642m.g I 0.838
MYB82 Arabidopsis thaliana AT5G52600 I 0.838
Cucsa.132300 Cucumis sativus Cucsa.132300 N 0.837
Bo2g047590 Brassica oleracea Bo2g047590 I 0.835
SapurV1A.0034s0330 Salix purpurea SapurV1A.0034s0330 N 0.834
Bostr.7305s0011 Boechera stricta Bostr.7305s0011 I 0.833
POPTR_0006s06530 Populus trichocarpa POPTR_0006s06530 N 0.828
Thhalv10014754m.g Eutrema salsugineum Thhalv10014754m.g I 0.827
Gorai.004G276500 Gossypium raimondii Gorai.004G276500 N 0.825
Bra022602 Brassica rapa Bra022602 I 0.824
AtMYB82 Arabidopsis lyrata Al_scaffold_0008_1642 I 0.817
mgf023205m Mimulus guttatus mgf023205m I 0.806
PGSC0003DMG400030913 Solanum tuberosum PGSC0003DMG400030913 I 0.805
Solyc07g008010.2 Solanum lycopersicum Solyc07g008010.2 I 0.805
SapurV1A.0197s0090 Salix purpurea SapurV1A.0197s0090 N 0.796
SapurV1A.2191s0020 Salix purpurea SapurV1A.2191s0020 N 0.796
Bra029113 Brassica rapa Bra029113 I 0.784
Bo3g023140 Brassica oleracea Bo3g023140 I 0.784
VIT_11s0016g05660 Vitis vinifera VIT_11s0016g05660 N 0.775
cassava29820.valid.m1 Manihot esculenta cassava29820.valid.m1 I 0.724
GLYMA10G35050 Glycine max GLYMA10G35050 I 0.713
VIT_11s0016g05690 Vitis vinifera VIT_11s0016g05690 N 0.708
GSMUA_Achr3G07940_001 Musa acuminata GSMUA_Achr3G07940_001 I 0.697
Eucgr.B00866 Eucalyptus grandis Eucgr.B00866 I 0.695
AMTR_s00024p00224470 Amborella trichopoda AMTR_s00024p00224470 I 0.695
AMTR_s00024p00224850 Amborella trichopoda AMTR_s00024p00224850 I 0.695
GLYMA19G44660 Glycine max GLYMA19G44660 I 0.694
GLYMA20G32510 Glycine max GLYMA20G32510 I 0.693
Gorai.004G150800 Gossypium raimondii Gorai.004G150800 I 0.692
gene15390-v1.0-hybrid Fragaria vesca gene15390-v1.0-hybrid I 0.692
POPTR_0018s05530 Populus trichocarpa POPTR_0018s05530 I 0.692
SapurV1A.0710s0050 Salix purpurea SapurV1A.0710s0050 I 0.692
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.690
PDK_20s1310471g002 Phoenix dactylifera PDK_20s1310471g002 I 0.690
AMTR_s00024p00224180 Amborella trichopoda AMTR_s00024p00224180 I 0.689
GSMUA_Achr3G07950_001 Musa acuminata GSMUA_Achr3G07950_001 I 0.689
PRUPE_ppa019380mg Prunus persica PRUPE_ppa019380mg I 0.688
TCM_037379 Theobroma cacao TCM_037379 I 0.688
PDK_20s1918041g001 Phoenix dactylifera PDK_20s1918041g001 I 0.688
GLYMA07G05960 Glycine max GLYMA07G05960 I 0.687
GLYMA16G02570 Glycine max GLYMA16G02570 I 0.687
SapurV1A.1730s0020 Salix purpurea SapurV1A.1730s0020 I 0.684
SapurV1A.0390s0200 Salix purpurea SapurV1A.0390s0200 I 0.684
Pm029489 Prunus mume Pm029489 I 0.684
cassava6228.valid.m1 Manihot esculenta cassava6228.valid.m1 I 0.684
POPTR_0017s02990 Populus trichocarpa POPTR_0017s02990 I 0.684
MDP0000184538 Malus domestica MDP0000184538 I 0.683
POPTR_0004s08650 Populus trichocarpa POPTR_0004s08650 I 0.681
POPTR_0002s17460 Populus trichocarpa POPTR_0002s17460 I 0.679
Eucgr.K01504 Eucalyptus grandis Eucgr.K01504 I 0.679
PDK_20s1554342g001 Phoenix dactylifera PDK_20s1554342g001 I 0.679
SapurV1A.0003s0900 Salix purpurea SapurV1A.0003s0900 I 0.679
POPTR_0014s09630 Populus trichocarpa POPTR_0014s09630 I 0.676
AMTR_s00030p00146410 Amborella trichopoda AMTR_s00030p00146410 I 0.676
SapurV1A.0013s0160 Salix purpurea SapurV1A.0013s0160 I 0.676
MTR_8g027345 Medicago truncatula MTR_8g027345 I 0.676
VIT_13s0084g00530 Vitis vinifera VIT_13s0084g00530 I 0.675
TCM_019261 Theobroma cacao TCM_019261 I 0.674
VIT_14s0006g01620 Vitis vinifera VIT_14s0006g01620 I 0.674
Ca_17627 Cicer arietinum Ca_17627 I 0.673
GSMUA_Achr6G04400_001 Musa acuminata GSMUA_Achr6G04400_001 I 0.673
Q2TCH0_PETHY Petunia x hybrida Q2TCH0_PETHY D 0.671
VIT_09s0002g01410 Vitis vinifera VIT_09s0002g01410 I 0.671
GSMUA_Achr8G22690_001 Musa acuminata GSMUA_Achr8G22690_001 I 0.670
e_gw1.6.239.1 Physcomitrella patens e_gw1.6.239.1 I 0.669
orange1.1g036215m.g Citrus sinensis orange1.1g036215m.g I 0.669
Eucgr.C03151 Eucalyptus grandis Eucgr.C03151 I 0.668
POPTR_0018s05750 Populus trichocarpa POPTR_0018s05750 I 0.668
Cagra.5428s0005 Capsella grandiflora Cagra.5428s0005 I 0.667
TT2 Arabidopsis thaliana AT5G35550 I 0.667
PK05970.1 Cannabis sativa PK05970.1 I 0.667
TT2 Arabidopsis lyrata fgenesh2_kg.7__3049__AT5G35550.1 I 0.667
Ca_01329 Cicer arietinum Ca_01329 I 0.667
PRUPE_ppa023768mg Prunus persica PRUPE_ppa023768mg I 0.667
Solyc12g049300.1 Solanum lycopersicum Solyc12g049300.1 I 0.667
Pm005572 Prunus mume Pm005572 I 0.667
Bostr.29044s0068 Boechera stricta Bostr.29044s0068 I 0.667
Carubv10006684m.g Capsella rubella Carubv10006684m.g I 0.667
Ca_06236 Cicer arietinum Ca_06236 I 0.667
Eucgr.C02096 Eucalyptus grandis Eucgr.C02096 I 0.667
Carubv10005698m.g Capsella rubella Carubv10005698m.g I 0.666
MYB23 Arabidopsis thaliana AT5G40330 D 0.666
Bra025589 Brassica rapa Bra025589 I 0.666
Bostr.7200s0005 Boechera stricta Bostr.7200s0005 I 0.666
Thhalv10028340m.g Eutrema salsugineum Thhalv10028340m.g I 0.666
Cagra.3160s0003 Capsella grandiflora Cagra.3160s0003 I 0.666
Lus10039173.g Linum usitatissimum Lus10039173.g I 0.666
GLYMA20G32500 Glycine max GLYMA20G32500 I 0.665
MDP0000159011 Malus domestica MDP0000159011 I 0.665
TCM_037377 Theobroma cacao TCM_037377 I 0.664
Solyc08g008480.2 Solanum lycopersicum Solyc08g008480.2 I 0.664
PGSC0003DMG400005848 Solanum tuberosum PGSC0003DMG400005848 I 0.664
Gorai.001G015200 Gossypium raimondii Gorai.001G015200 I 0.663
SELMODRAFT_127220 Selaginella moellendorffii SELMODRAFT_127220 I 0.663
Eucgr.C00724 Eucalyptus grandis Eucgr.C00724 I 0.663
SELMODRAFT_98669 Selaginella moellendorffii SELMODRAFT_98669 I 0.663
LjSGA_023691.1 Lotus japonicus LjSGA_023691.1 I 0.662
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I 0.662
Lus10013762.g Linum usitatissimum Lus10013762.g I 0.662
SapurV1A.1276s0060 Salix purpurea SapurV1A.1276s0060 I 0.662
chr1.CM0105.50.nd Lotus japonicus chr1.CM0105.50.nd I 0.662
POPTR_0018s05740 Populus trichocarpa POPTR_0018s05740 I 0.661