CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava33974.m1
(
Manihot esculenta
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
cassava33974.m1
T284202_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB98
M02301_2.00
Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN
PBM
Weirauch et al.(2014)
pTH8148
0.775
0.860
MYB98
M07108_2.00
Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH
Dap-seq
OMalley et al.(2016)
MYB98_col_a
0.775
0.860
MYB118
M07087_2.00
Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH
Dap-seq
OMalley et al.(2016)
MYB118_col_a
0.683
0.753
MYB118
M07088_2.00
Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH
Dap-seq
OMalley et al.(2016)
MYB118_colamp_a
0.683
0.753
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava33974.m1
Myb
177
223
KGQWTIEEDRLLAQLVEQYGLRKWSHIARMLPGRIGKQCRERWHNHL
cassava33974.m1
Myb
229
274
KDIWSEDEDKVLIQAHAEIGNKWAEIAKRLPGRTENSIKNHWNATK
Links
Other
Myb/SANT
family TFs
Other
Manihot esculenta
TFs
145 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy