cassava36126.valid.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava36126.valid.m1 T284228_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
OS08G0157600
M02330_2.00
Oryza sativa
DNRTATCHN

NDGATAYNH
PBM
Weirauch et al.(2014)
pTH7793
0.899 0.957
LHY
M06997_2.00
Arabidopsis thaliana
NWAAATATCT

AGATATTTWN
Dap-seq
OMalley et al.(2016)
LHY1_col_a
0.891 0.935
LHY
M06998_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LHY1_colamp_a
0.891 0.935
CCA1
M00875_2.00
Arabidopsis thaliana
NDNRWATCN

NGATWYNHN
PBM
Franco-Zorrilla et al.(2014)
CCA1
0.854 0.891
CCA1
M11039_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CCA1_Q5
0.854 0.891
RVE7
M01069_2.00
Arabidopsis thaliana
NDHRWATCNN

NNGATWYDHN
PBM
Sullivan et al.(2014)
pTH7081
0.800 0.826
RVE7
M02286_2.00
Arabidopsis thaliana
NDARTATCH

DGATAYTHN
PBM
Weirauch et al.(2014)
pTH7277
0.800 0.826
RVE7L
M07071_2.00
Arabidopsis thaliana
NNNNWAAATATCWNN

NNWGATATTTWNNNN
Dap-seq
OMalley et al.(2016)
AT3G10113_col_a
0.800 0.826
RVE7
M07008_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
EPR1_colamp_a
0.800 0.826
RVE7
M07009_2.00
Arabidopsis thaliana
NWAAATATCTHN

NDAGATATTTWN
Dap-seq
OMalley et al.(2016)
EPR1_col
0.800 0.826
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT

AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.767 0.848
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN

NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.767 0.848
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW

WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.767 0.848
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN

NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.766 0.826
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava36126.valid.m1 Myb 24 69

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
21409_YPL230W Saccharomyces mikatae 21409_YPL230W I 0.000
21995_YPL230W Saccharomyces paradoxus 21995_YPL230W I 0.000
24535_YPL230W Saccharomyces bayanus 24535_YPL230W I 0.000
AACERI_AaceriAFL136W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFL136W I 0.000
CAGL0E06116g Candida glabrata CAGL0E06116g D 0.000
Ecym_2159 Eremothecium cymbalariae Ecym_2159 I 0.000
KNAG_0F01710 Kazachstania naganishii KNAG_0F01710 I 0.000
KTB10507.1 Candida glabrata KTB10507.1 D 0.000
NCAS_0G01270 Naumovozyma castellii NCAS_0G01270 I 0.000
SAKL0A03476g Lachancea kluyveri SAKL0A03476g I 0.000
SKUD_109001 Saccharomyces kudriavzevii SKUD_109001 I 0.000
USV1 Saccharomyces cerevisiae YPL230W D 0.000