cassava9078.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava9078.m1 T284341_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.689 0.937
MYB_AVIMB
M11068_2.00 		Avian myeloblastosis virus
VRYAACKGNH
DNCMGTTRYB		 Transfac
Matys et al.(2006)
V$VMYB_01 		0.685 0.694
MYB_AVIMB
M11069_2.00 		Avian myeloblastosis virus
BVYAACGGH
DCCGTTRBV		 Transfac
Matys et al.(2006)
V$VMYB_02 		0.685 0.694
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.671 0.892
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.671 0.892
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava9078.m1 Myb 1 19
cassava9078.m1 Myb 25 71
cassava9078.m1 Myb 77 121

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_21127 Cicer arietinum Ca_21127 I 0.786
PDK_20s1314361g001 Phoenix dactylifera PDK_20s1314361g001 N 0.781
SELMODRAFT_75978 Selaginella moellendorffii SELMODRAFT_75978 I 0.767
F775_12121 Aegilops tauschii F775_12121 N 0.751
TRIUR3_33469 Triticum urartu TRIUR3_33469 N 0.751
OPUNC01G35700 Oryza punctata OPUNC01G35700 N 0.744
Pm005124 Prunus mume Pm005124 I 0.739
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.735
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.735
Cla022565 Citrullus lanatus Cla022565 I 0.733
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.733
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.733
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.733
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.729
Ca_01884 Cicer arietinum Ca_01884 I 0.729
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.728
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.724
Cla023357 Citrullus lanatus Cla023357 I 0.724
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.724
mgf006384m Mimulus guttatus mgf006384m I 0.724
F775_10106 Aegilops tauschii F775_10106 I 0.723
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.719
TCM_047091 Theobroma cacao TCM_047091 I 0.719
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.719
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.715
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.713
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.710
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.710
29794.m003447 Ricinus communis 29794.m003447 I 0.706
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.705
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.705
MLOC_50701 Hordeum vulgare MLOC_50701 N 0.699
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.693
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.693
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.691
Ca_14925 Cicer arietinum Ca_14925 I 0.690
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.689
AMEC012340 Anopheles melas AMEC012340 N 0.689
MDP0000179225 Malus domestica MDP0000179225 I 0.688
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.687
MYB_AVIMB Avian myeloblastosis virus MYB_AVIMB D 0.685
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.684
mgf008601m Mimulus guttatus mgf008601m I 0.684
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.682
mgf002244m Mimulus guttatus mgf002244m N 0.680
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.680
MDP0000295807 Malus domestica MDP0000295807 I 0.680
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.680
MYBL1 Bos taurus ENSBTAG00000011981 I 0.679
MYBL1 Choloepus hoffmanni ENSCHOG00000012311 I 0.679
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.676
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.671
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.671
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.671
Bo7g115810 Brassica oleracea Bo7g115810 I 0.668
Bo1g010040 Brassica oleracea Bo1g010040 I 0.667
Bra011376 Brassica rapa Bra011376 I 0.667
Bo3g171130 Brassica oleracea Bo3g171130 I 0.666
Bra034531 Brassica rapa Bra034531 I 0.666
F775_05724 Aegilops tauschii F775_05724 I 0.664
Bra006102 Brassica rapa Bra006102 I 0.662
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.662
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.661