CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava9078.m1
(
Manihot esculenta
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
cassava9078.m1
T284341_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.689
0.937
MYB_AVIMB
M11068_2.00
Avian myeloblastosis virus
VRYAACKGNH
DNCMGTTRYB
Transfac
Matys et al.(2006)
V$VMYB_01
0.685
0.694
MYB_AVIMB
M11069_2.00
Avian myeloblastosis virus
BVYAACGGH
DCCGTTRBV
Transfac
Matys et al.(2006)
V$VMYB_02
0.685
0.694
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.671
0.892
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.671
0.892
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava9078.m1
Myb
1
19
ECFKDRTDVQCLHRWQKVL
cassava9078.m1
Myb
25
71
KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHL
cassava9078.m1
Myb
77
121
KEAWTQQEELALIRAHQIYGNRWAELTKFLPGRTDNAIKNHWNSS
Links
Other
Myb/SANT
family TFs
Other
Manihot esculenta
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy