Cucsa.082250 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.082250 T284378_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY

RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.909 0.979
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC

GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.909 0.979
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.843 0.894
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN

NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.835 0.894
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY

RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.835 0.894
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY

RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.835 0.894
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.817 0.894
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY

RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.817 0.894
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC

GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.817 0.894
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN

NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.794 0.894
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT

ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.776 0.851
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN

NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.776 0.851
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN

NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.775 0.872
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN

NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.775 0.872
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY

RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.775 0.872
PK14402.1
M02352_2.00
Cannabis sativa
NDWGATTCSNN

NNSGAATCWHN
PBM
Weirauch et al.(2014)
pTH9491
0.754 0.851
HHO5
M07112_2.00
Arabidopsis thaliana
HNDAAGATTCH

DGAATCTTHND
Dap-seq
OMalley et al.(2016)
AT4G37180_col_a
0.711 0.809
HHO5
M07113_2.00
Arabidopsis thaliana
NNDAAGATTCY

RGAATCTTHNN
Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a
0.711 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.082250.1 Myb 249 300

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.000
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.000
SIGA Arabidopsis lyrata scaffold_200883.1 N 0.000
SIGA Arabidopsis thaliana AT1G64860 N 0.000
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.000
Bo2g097550 Brassica oleracea Bo2g097550 N 0.000
Bra008513 Brassica rapa Bra008513 N 0.000
PK03826.1 Cannabis sativa PK03826.1 N 0.000
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 0.000
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 0.000
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.000
Ca_22622 Cicer arietinum Ca_22622 N 0.000
Ca_22625 Cicer arietinum Ca_22625 N 0.000
Cla006897 Citrullus lanatus Cla006897 N 0.000
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.000
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.000
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.000
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.000
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.000
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.000
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.000
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.000
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.000
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.000
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.000
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.000
MDP0000934360 Malus domestica MDP0000934360 N 0.000
MDP0000939377 Malus domestica MDP0000939377 N 0.000
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.000
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.000
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.000
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.000
mgf004750m Mimulus guttatus mgf004750m N 0.000
mgf015154m Mimulus guttatus mgf015154m N 0.000
mgf016433m Mimulus guttatus mgf016433m N 0.000
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.000
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.000
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.000
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.000
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.000
Pm019567 Prunus mume Pm019567 N 0.000
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.000
30148.m001468 Ricinus communis 30148.m001468 N 0.000
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.000
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.000
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.000
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.000
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.000
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.000
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.000
TCM_025640 Theobroma cacao TCM_025640 N 0.000
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N 0.000
SIGA Vitis vinifera VIT_16s0039g00660 N 0.000