Cucsa.102710 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.102710 T284395_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN

NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.788 0.871
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW

WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.788 0.871
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH

DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.788 0.871
MYB73
M07114_2.00
Arabidopsis thaliana
TAACBGWHWHW

WDWDWCVGTTA
Dap-seq
OMalley et al.(2016)
MYB73_col_a
0.779 0.914
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN

NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.775 0.882
PK28565.1
M02357_2.00
Cannabis sativa
TAACBGTY

RACVGTTA
PBM
Weirauch et al.(2014)
pTH9653
0.775 0.882
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN

NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.775 0.882
F3A4.140
M02299_2.00
Arabidopsis thaliana
YAACBGYY

RRCVGTTR
PBM
Weirauch et al.(2014)
pTH7112
0.763 0.849
F3A4.140
M07095_2.00
Arabidopsis thaliana
TAACBGYHWHNNHNN

NNDNNDWDRCVGTTA
Dap-seq
OMalley et al.(2016)
MYB77_col_a
0.763 0.849
F3A4.140
M07096_2.00
Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV

BKTWWDWTASGGTTRCGGTT
Dap-seq
OMalley et al.(2016)
MYB77_colamp_a
0.763 0.849
F3A4.140
M02701_2.00
Arabidopsis thaliana
SYAACYGYCVHBN

NVDBGRCRGTTRS
SELEX
Mathelier et al.(2014)
MA0575.1
0.763 0.849
F3A4.140
M11044_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB77_01
0.763 0.849
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN

NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.680 0.774
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN

NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.678 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.102710.1 Myb 12 58
Cucsa.102710.1 Myb 64 109

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

320 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29848.m004632 Ricinus communis 29848.m004632 I 0.000
Bo7g096000 Brassica oleracea Bo7g096000 N 0.000
Bo9g011380 Brassica oleracea Bo9g011380 I 0.000
Bo9g171490 Brassica oleracea Bo9g171490 I 0.000
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I 0.000
Bostr.29827s0278 Boechera stricta Bostr.29827s0278 I 0.000
Bra008985 Brassica rapa Bra008985 I 0.000
Bra036543 Brassica rapa Bra036543 I 0.000
Cagra.1110s0005 Capsella grandiflora Cagra.1110s0005 I 0.000
Carubv10002040m.g Capsella rubella Carubv10002040m.g I 0.000
Carubv10003042m.g Capsella rubella Carubv10003042m.g I 0.000
Carubv10003050m.g Capsella rubella Carubv10003050m.g I 0.000
cassava30505.valid.m1 Manihot esculenta cassava30505.valid.m1 I 0.000
cassava40012.m1 Manihot esculenta cassava40012.m1 I 0.000
Ca_01764 Cicer arietinum Ca_01764 I 0.000
Ca_09050 Cicer arietinum Ca_09050 I 0.000
Ciclev10009526m.g Citrus clementina Ciclev10009526m.g I 0.000
Cla021283 Citrullus lanatus Cla021283 I 0.000
Cucsa.310360 Cucumis sativus Cucsa.310360 I 0.000
evm.TU.supercontig_259.2 Carica papaya evm.TU.supercontig_259.2 I 0.000
gene11636-v1.0-hybrid Fragaria vesca gene11636-v1.0-hybrid I 0.000
GLYMA04G07140 Glycine max GLYMA04G07140 I 0.000
GLYMA06G07240 Glycine max GLYMA06G07240 I 0.000
GLYMA17G31900 Glycine max GLYMA17G31900 I 0.000
Gorai.001G033200 Gossypium raimondii Gorai.001G033200 I 0.000
Gorai.004G292600 Gossypium raimondii Gorai.004G292600 I 0.000
Gorai.010G114800 Gossypium raimondii Gorai.010G114800 I 0.000
Gorai.011G082900 Gossypium raimondii Gorai.011G082900 I 0.000
LjSGA_019003.1 Lotus japonicus LjSGA_019003.1 I 0.000
Lus10002015.g Linum usitatissimum Lus10002015.g I 0.000
Lus10002912.g Linum usitatissimum Lus10002912.g I 0.000
Lus10019414.g Linum usitatissimum Lus10019414.g I 0.000
MDP0000178263 Malus domestica MDP0000178263 I 0.000
MDP0000287350 Malus domestica MDP0000287350 I 0.000
mgf017744m Mimulus guttatus mgf017744m I 0.000
MTR_1g012470 Medicago truncatula MTR_1g012470 I 0.000
MTR_3g107380 Medicago truncatula MTR_3g107380 I 0.000
orange1.1g028913m.g Citrus sinensis orange1.1g028913m.g I 0.000
PGSC0003DMG400030228 Solanum tuberosum PGSC0003DMG400030228 I 0.000
Pm004616 Prunus mume Pm004616 I 0.000
POPTR_0006s26990 Populus trichocarpa POPTR_0006s26990 I 0.000
POPTR_0018s01680 Populus trichocarpa POPTR_0018s01680 I 0.000
PRUPE_ppa023908mg Prunus persica PRUPE_ppa023908mg I 0.000
SapurV1A.0043s0690 Salix purpurea SapurV1A.0043s0690 I 0.000
SapurV1A.0192s0020 Salix purpurea SapurV1A.0192s0020 I 0.000
SHN2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002026 I 0.000
SHN2 Arabidopsis thaliana AT5G11190 D 0.000
SHN3 Arabidopsis thaliana AT5G25390 I 0.000
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I 0.000
TCM_037007 Theobroma cacao TCM_037007 I 0.000
Thhalv10005514m.g Eutrema salsugineum Thhalv10005514m.g I 0.000
Thhalv10015363m.g Eutrema salsugineum Thhalv10015363m.g I 0.000
VIT_04s0008g05440 Vitis vinifera VIT_04s0008g05440 I 0.000