CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.111120
(
Cucumis sativus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cucsa.111120
T284407_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.752
0.772
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.752
0.772
MYB108
M07065_2.00
Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY
Dap-seq
OMalley et al.(2016)
BOS1_col_a
0.736
0.739
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.716
0.761
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.716
0.761
MYB05_ANTMA
M11067_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.665
0.717
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.111120.1
Myb
35
82
RGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSCRLRWLNYL
Cucsa.111120.1
Myb
88
132
RGNLSPQEQLLILDLHSRWGNRWSKIAQQLPGRTDNEIKNYWRTK
Links
Other
Myb/SANT
family TFs
Other
Cucumis sativus
TFs
556 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy