Cucsa.175460 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.175460 T284450_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.772 0.850
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.714 0.771
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.697 0.757
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.691 0.729
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.691 0.729
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.662 0.721
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.175460.1 Myb 59 105
Cucsa.175460.1 Myb 111 157
Cucsa.175460.1 Myb 163 208
Cucsa.175460.2 Myb 59 105
Cucsa.175460.2 Myb 111 157
Cucsa.175460.2 Myb 163 208
Cucsa.175460.3 Myb 59 105
Cucsa.175460.3 Myb 111 157
Cucsa.175460.3 Myb 163 208
Cucsa.175460.4 Myb 59 105
Cucsa.175460.4 Myb 111 157
Cucsa.175460.4 Myb 163 208

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

Invalid Input OrderBy

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action