CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.280970
(
Cucumis sativus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cucsa.280970
T284492_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SRM1
M02307_2.00
Arabidopsis thaliana
NNHNATCNN
NNGATNDNN
PBM
Weirauch et al.(2014)
pTH7080
0.703
0.806
SRM1
M07121_2.00
Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a
0.703
0.806
SRM1
M07122_2.00
Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_col_b
0.703
0.806
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.280970.1
Myb
120
167
GTAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVSRTPTQVASHAQKYF
Cucsa.280970.2
Myb
120
167
GTAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVSRTPTQVASHAQKYF
Cucsa.280970.3
Myb
120
167
GTAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVSRTPTQVASHAQKYF
Cucsa.280970.4
Myb
120
167
GTAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVSRTPTQVASHAQKYF
Cucsa.280970.5
Myb
120
167
GTAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVSRTPTQVASHAQKYF
Cucsa.280970.6
Myb
120
167
GTAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVSRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Cucumis sativus
TFs
87 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy