CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh1_pg.C_550102
(
Physcomitrella patens
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
estExt_fgenesh1_pg.C_550102
T284694_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK26523.1
M01283_2.00
Cannabis sativa
NWHATTCYNN
NNRGAATDWN
PBM
Lambert et al.(2019)
pTH11304
0.849
0.915
AT2G40260
M07057_2.00
Arabidopsis thaliana
HHWDWAHATTCYHTN
NADRGAATDTWHWDD
Dap-seq
OMalley et al.(2016)
AT2G40260_col_a
0.828
0.851
AT2G40260
M07058_2.00
Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT
ADRGAATDTWHHNDDWHHNN
Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a
0.828
0.851
AT2G38300
M07056_2.00
Arabidopsis thaliana
WAHATTCYHTH
DADRGAATDTW
Dap-seq
OMalley et al.(2016)
AT2G38300_col_a
0.772
0.851
AT1G14600
M01268_2.00
Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN
PBM
Lambert et al.(2019)
pTH11557
0.715
0.809
KAN1
M00878_2.00
Arabidopsis thaliana
NNRTNBNN
NNVNAYNN
PBM
Franco-Zorrilla et al.(2014)
KAN1
0.666
0.745
KAN1
M02308_2.00
Arabidopsis thaliana
NDNDTAHNHN
NDNDTAHNHN
PBM
Weirauch et al.(2014)
pTH7135
0.666
0.745
KAN2
M07018_2.00
Arabidopsis thaliana
HHHNDWATATTCTYH
DRAGAATATWHNDDD
Dap-seq
OMalley et al.(2016)
KAN2_col_a
0.666
0.745
KAN2
M07019_2.00
Arabidopsis thaliana
NWWTATTCYYH
DRRGAATAWWN
Dap-seq
OMalley et al.(2016)
KAN2_colamp_a
0.666
0.745
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_550102
Myb
96
147
RLRWTPDLHQCFVVAVERLGGQDRATPKLVLQLMDVKGLTIAHVKSHLQMYR
Links
Other
Myb/SANT
family TFs
Other
Physcomitrella patens
TFs
672 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy