estExt_fgenesh2_pg.C_1110034 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 estExt_fgenesh2_pg.C_1110034 T284713_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK26523.1
M01283_2.00 		Cannabis sativa
NWHATTCYNN
NNRGAATDWN		 PBM
Lambert et al.(2019)
pTH11304 		0.756 0.702
AT2G40260
M07057_2.00 		Arabidopsis thaliana
HHWDWAHATTCYHTN
NADRGAATDTWHWDD		 Dap-seq
OMalley et al.(2016)
AT2G40260_col_a 		0.741 0.723
AT2G40260
M07058_2.00 		Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT
ADRGAATDTWHHNDDWHHNN		 Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a 		0.741 0.723
AT2G38300
M07056_2.00 		Arabidopsis thaliana
WAHATTCYHTH
DADRGAATDTW		 Dap-seq
OMalley et al.(2016)
AT2G38300_col_a 		0.707 0.681
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_1110034 Myb 260 311

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

255 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr4G25920_001 Musa acuminata GSMUA_Achr4G25920_001 I 0.788
fgenesh1_pg.scaffold_32000038 Physcomitrella patens fgenesh1_pg.scaffold_32000038 I 0.762
Gorai.009G112300 Gossypium raimondii Gorai.009G112300 I 0.756
VIT_06s0004g07000 Vitis vinifera VIT_06s0004g07000 I 0.756
POPTR_0016s12940 Populus trichocarpa POPTR_0016s12940 I 0.756
MDP0000617021 Malus domestica MDP0000617021 I 0.756
TCM_042463 Theobroma cacao TCM_042463 I 0.756
orange1.1g041956m.g Citrus sinensis orange1.1g041956m.g I 0.756
PRUPE_ppa025397mg Prunus persica PRUPE_ppa025397mg I 0.756
Pm018961 Prunus mume Pm018961 I 0.756
27757.m000022 Ricinus communis 27757.m000022 I 0.756
cassava41268.m1 Manihot esculenta cassava41268.m1 I 0.756
OB12G10410 Oryza brachyantha OB12G10410 I 0.756
Ciclev10029989m.g Citrus clementina Ciclev10029989m.g I 0.756
cassava33845.m1 Manihot esculenta cassava33845.m1 I 0.756
evm.TU.supercontig_19.148 Carica papaya evm.TU.supercontig_19.148 I 0.756
cassava21831.m1 Manihot esculenta cassava21831.m1 I 0.756
TCM_042189 Theobroma cacao TCM_042189 I 0.756
POPTR_0010s19310 Populus trichocarpa POPTR_0010s19310 I 0.756
SapurV1A.0650s0140 Salix purpurea SapurV1A.0650s0140 I 0.756
SapurV1A.0905s0010 Salix purpurea SapurV1A.0905s0010 I 0.756
PK26523.1 Cannabis sativa PK26523.1 D 0.756
AMTR_s00021p00013790 Amborella trichopoda AMTR_s00021p00013790 I 0.756
fgenesh1_pg.scaffold_226000065 Physcomitrella patens fgenesh1_pg.scaffold_226000065 I 0.751
POPTR_0008s07170 Populus trichocarpa POPTR_0008s07170 I 0.745
SapurV1A.0061s0540 Salix purpurea SapurV1A.0061s0540 I 0.745
fgenesh1_pg.scaffold_2000161 Physcomitrella patens fgenesh1_pg.scaffold_2000161 I 0.744
AT2G40260 Arabidopsis thaliana AT2G40260 D 0.741
GSMUA_Achr7G22410_001 Musa acuminata GSMUA_Achr7G22410_001 I 0.741
Carubv10023302m.g Capsella rubella Carubv10023302m.g I 0.741
fgenesh1_pm.C_scaffold_4001775 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001775 I 0.741
Cagra.7053s0009 Capsella grandiflora Cagra.7053s0009 I 0.741
29814.m000747 Ricinus communis 29814.m000747 I 0.741
Thhalv10016733m.g Eutrema salsugineum Thhalv10016733m.g I 0.741
POPTR_0001s28690 Populus trichocarpa POPTR_0001s28690 I 0.741
SapurV1A.0042s0270 Salix purpurea SapurV1A.0042s0270 I 0.741
Bo4g188940 Brassica oleracea Bo4g188940 I 0.741
POPTR_0009s07890 Populus trichocarpa POPTR_0009s07890 I 0.741
Eucgr.J00182 Eucalyptus grandis Eucgr.J00182 I 0.741
MLOC_72013 Hordeum vulgare MLOC_72013 I 0.737
TRIUR3_11585 Triticum urartu TRIUR3_11585 I 0.737
Traes_5BL_0C6735099 Triticum aestivum Traes_5BL_0C6735099 I 0.737
estExt_fgenesh1_pg.C_550102 Physcomitrella patens estExt_fgenesh1_pg.C_550102 I 0.737
F775_13531 Aegilops tauschii F775_13531 I 0.737
GRMZM2G333083 Zea mays GRMZM2G333083 I 0.734
Eucgr.K02966 Eucalyptus grandis Eucgr.K02966 I 0.729
Solyc02g076670.2 Solanum lycopersicum Solyc02g076670.2 I 0.729
PGSC0003DMG400004389 Solanum tuberosum PGSC0003DMG400004389 I 0.729
Solyc03g006150.2 Solanum lycopersicum Solyc03g006150.2 I 0.729
PGSC0003DMG400010194 Solanum tuberosum PGSC0003DMG400010194 I 0.729
fgenesh1_pg.scaffold_68000145 Physcomitrella patens fgenesh1_pg.scaffold_68000145 N 0.724
29842.m003572 Ricinus communis 29842.m003572 I 0.720
SELMODRAFT_426960 Selaginella moellendorffii SELMODRAFT_426960 I 0.719
SELMODRAFT_438636 Selaginella moellendorffii SELMODRAFT_438636 I 0.719
SELMODRAFT_424890 Selaginella moellendorffii SELMODRAFT_424890 I 0.719
SELMODRAFT_423935 Selaginella moellendorffii SELMODRAFT_423935 I 0.719
Gorai.002G169300 Gossypium raimondii Gorai.002G169300 I 0.717
Eucgr.B02627 Eucalyptus grandis Eucgr.B02627 I 0.717
cassava27240.m1 Manihot esculenta cassava27240.m1 I 0.717
Sb08g000510 Sorghum bicolor Sb08g000510 I 0.715
Traes_4AL_72ECC7747 Triticum aestivum Traes_4AL_72ECC7747 I 0.715
Traes_4DS_99EC36CD4 Triticum aestivum Traes_4DS_99EC36CD4 I 0.715
Si010342m.g Setaria italica Si010342m.g I 0.715
Si026524m.g Setaria italica Si026524m.g I 0.715
TRIUR3_10881 Triticum urartu TRIUR3_10881 I 0.715
OB11G10130 Oryza brachyantha OB11G10130 I 0.715
LPERR11G00400 Leersia perrieri LPERR11G00400 I 0.715
Pavir.J16957 Panicum virgatum Pavir.J16957 I 0.715
Pavir.J01622 Panicum virgatum Pavir.J01622 I 0.715
F775_29879 Aegilops tauschii F775_29879 I 0.715
GRMZM5G846506 Zea mays GRMZM5G846506 I 0.715
orange1.1g029903m.g Citrus sinensis orange1.1g029903m.g I 0.715
Ciclev10032941m.g Citrus clementina Ciclev10032941m.g I 0.715
BRADI4G44930 Brachypodium distachyon BRADI4G44930 I 0.715
PDK_20s1498711g001 Phoenix dactylifera PDK_20s1498711g001 I 0.715
MTR_8g086410 Medicago truncatula MTR_8g086410 I 0.713
MDP0000272003 Malus domestica MDP0000272003 I 0.707
Traes_6BS_44456AE22 Triticum aestivum Traes_6BS_44456AE22 I 0.707
TCM_021628 Theobroma cacao TCM_021628 I 0.707
Traes_7BL_C35CABF69 Triticum aestivum Traes_7BL_C35CABF69 I 0.707
Lus10017442.g Linum usitatissimum Lus10017442.g I 0.707
Lus10002207.g Linum usitatissimum Lus10002207.g I 0.707
TRIUR3_15779 Triticum urartu TRIUR3_15779 I 0.707
Lus10007513.g Linum usitatissimum Lus10007513.g I 0.707
Lus10012239.g Linum usitatissimum Lus10012239.g I 0.707
Pavir.Aa02813 Panicum virgatum Pavir.Aa02813 I 0.707
PK15677.1 Cannabis sativa PK15677.1 I 0.707
AC219020.4_FG002 Zea mays AC219020.4_FG002 I 0.707
Thhalv10016890m.g Eutrema salsugineum Thhalv10016890m.g I 0.707
SapurV1A.0029s0520 Salix purpurea SapurV1A.0029s0520 I 0.707
Pavir.Db01175 Panicum virgatum Pavir.Db01175 I 0.707
TRIUR3_34985 Triticum urartu TRIUR3_34985 I 0.707
LjSGA_106880.1 Lotus japonicus LjSGA_106880.1 I 0.707
Pavir.Ab01097 Panicum virgatum Pavir.Ab01097 I 0.707
Pavir.Da00896 Panicum virgatum Pavir.Da00896 I 0.707
orange1.1g035517m.g Citrus sinensis orange1.1g035517m.g I 0.707
Gorai.004G233300 Gossypium raimondii Gorai.004G233300 I 0.707
Eucgr.J01904 Eucalyptus grandis Eucgr.J01904 I 0.707
Cucsa.047000 Cucumis sativus Cucsa.047000 I 0.707
evm.TU.supercontig_120.33 Carica papaya evm.TU.supercontig_120.33 I 0.707
gene13487-v1.0-hybrid Fragaria vesca gene13487-v1.0-hybrid I 0.707
gene15767-v1.0-hybrid Fragaria vesca gene15767-v1.0-hybrid I 0.707
Cucsa.130050 Cucumis sativus Cucsa.130050 I 0.707
Cucsa.384780 Cucumis sativus Cucsa.384780 I 0.707
Cagra.4190s0017 Capsella grandiflora Cagra.4190s0017 I 0.707
TCM_001726 Theobroma cacao TCM_001726 I 0.707
Carubv10023575m.g Capsella rubella Carubv10023575m.g I 0.707
Ciclev10017867m.g Citrus clementina Ciclev10017867m.g I 0.707
gene21014-v1.0-hybrid Fragaria vesca gene21014-v1.0-hybrid I 0.707
Pm013978 Prunus mume Pm013978 I 0.707
Gorai.002G265400 Gossypium raimondii Gorai.002G265400 I 0.707
Ca_06993 Cicer arietinum Ca_06993 I 0.707
VIT_12s0028g02080 Vitis vinifera VIT_12s0028g02080 I 0.707
Bostr.23794s0245 Boechera stricta Bostr.23794s0245 I 0.707
Gorai.011G039000 Gossypium raimondii Gorai.011G039000 I 0.707
Ca_08598 Cicer arietinum Ca_08598 I 0.707
Ca_09400 Cicer arietinum Ca_09400 I 0.707
Pm002861 Prunus mume Pm002861 I 0.707
Cla018361 Citrullus lanatus Cla018361 I 0.707
Cla013748 Citrullus lanatus Cla013748 I 0.707
Cla009858 Citrullus lanatus Cla009858 I 0.707
Gorai.012G117800 Gossypium raimondii Gorai.012G117800 I 0.707
TCM_029684 Theobroma cacao TCM_029684 I 0.707
GLYMA08G12320 Glycine max GLYMA08G12320 I 0.707
OLONG_024611 Oryza longistaminata OLONG_024611 I 0.707
GLYMA07G18870 Glycine max GLYMA07G18870 I 0.707
OGLUM06G18870 Oryza glumaepatula OGLUM06G18870 I 0.707
GLYMA12G33911 Glycine max GLYMA12G33911 I 0.707
OGLUM02G02260 Oryza glumaepatula OGLUM02G02260 I 0.707
GLYMA13G30154 Glycine max GLYMA13G30154 I 0.707
GLYMA05G29161 Glycine max GLYMA05G29161 I 0.707
ONIVA02G11280 Oryza nivara ONIVA02G11280 I 0.707
BRADI3G09160 Brachypodium distachyon BRADI3G09160 I 0.707
ORGLA02G0091700 Oryza glaberrima ORGLA02G0091700 I 0.707
F775_05424 Aegilops tauschii F775_05424 I 0.707
OPUNC06G16010 Oryza punctata OPUNC06G16010 I 0.707
ONIVA06G21150 Oryza nivara ONIVA06G21150 I 0.707
fgenesh2_kg.4__1901__AT2G38300.1 Arabidopsis lyrata fgenesh2_kg.4__1901__AT2G38300.1 I 0.707
GLYMA13G36616 Glycine max GLYMA13G36616 I 0.707
GLYMA15G08970 Glycine max GLYMA15G08970 I 0.707
MLOC_64597 Hordeum vulgare MLOC_64597 I 0.707
MTR_2g084230 Medicago truncatula MTR_2g084230 I 0.707
MLOC_49594 Hordeum vulgare MLOC_49594 I 0.707
LPERR06G14620 Leersia perrieri LPERR06G14620 I 0.707
GSMUA_Achr7G13880_001 Musa acuminata GSMUA_Achr7G13880_001 I 0.707
LPERR02G08660 Leersia perrieri LPERR02G08660 I 0.707
MTR_7g069660 Medicago truncatula MTR_7g069660 I 0.707
OB02G19030 Oryza brachyantha OB02G19030 I 0.707
OBART02G10190 Oryza barthii OBART02G10190 I 0.707
OBART06G17710 Oryza barthii OBART06G17710 I 0.707
OB06G25370 Oryza brachyantha OB06G25370 I 0.707
GLYMA18G43550 Glycine max GLYMA18G43550 I 0.707
GSMUA_Achr10G14250_001 Musa acuminata GSMUA_Achr10G14250_001 I 0.707
GRMZM2G477238 Zea mays GRMZM2G477238 I 0.707
ORGLA06G0148100 Oryza glaberrima ORGLA06G0148100 I 0.707
F775_07349 Aegilops tauschii F775_07349 I 0.707
BGIOSGA007863 Oryza indica BGIOSGA007863 I 0.707
OS06G0543200 Oryza sativa OS06G0543200 I 0.707
Sb10g021360 Sorghum bicolor Sb10g021360 I 0.707
PGSC0003DMG400030032 Solanum tuberosum PGSC0003DMG400030032 I 0.707
AT2G38300 Arabidopsis thaliana AT2G38300 D 0.707
Solyc06g051060.2 Solanum lycopersicum Solyc06g051060.2 I 0.707
Si016955m.g Setaria italica Si016955m.g I 0.707
Sb04g008670 Sorghum bicolor Sb04g008670 I 0.707
OS02G0241200 Oryza sativa OS02G0241200 I 0.707
Bo4g029640 Brassica oleracea Bo4g029640 I 0.707
ORUFI02G10190 Oryza rufipogon ORUFI02G10190 I 0.707
PRUPE_ppa017500mg Prunus persica PRUPE_ppa017500mg I 0.707
ORUFI06G18740 Oryza rufipogon ORUFI06G18740 I 0.707
BGIOSGA021086 Oryza indica BGIOSGA021086 I 0.707
Bra005124 Brassica rapa Bra005124 I 0.707
PRUPE_ppa021179mg Prunus persica PRUPE_ppa021179mg I 0.707
PRUPE_ppa015662mg Prunus persica PRUPE_ppa015662mg I 0.702
GLYMA15G11576 Glycine max GLYMA15G11576 I 0.702
fgenesh2_pg.scaffold_137000062 Physcomitrella patens fgenesh2_pg.scaffold_137000062 I 0.702
Ca_00645 Cicer arietinum Ca_00645 I 0.702
cassava15362.m1 Manihot esculenta cassava15362.m1 I 0.702
GLYMA09G00685 Glycine max GLYMA09G00685 I 0.702
GLYMA01G31044 Glycine max GLYMA01G31044 I 0.700
Bra000180 Brassica rapa Bra000180 I 0.700
Bo3g034850 Brassica oleracea Bo3g034850 I 0.700
PGSC0003DMG400026644 Solanum tuberosum PGSC0003DMG400026644 I 0.700
MDP0000133017 Malus domestica MDP0000133017 I 0.700
Solyc09g005030.1 Solanum lycopersicum Solyc09g005030.1 I 0.700
Aquca_004_00431 Aquilegia coerulea Aquca_004_00431 I 0.700
GSMUA_Achr11G01510_001 Musa acuminata GSMUA_Achr11G01510_001 I 0.699
GSMUA_Achr5G19200_001 Musa acuminata GSMUA_Achr5G19200_001 I 0.699
evm.TU.supercontig_2.82 Carica papaya evm.TU.supercontig_2.82 I 0.699
TCM_011166 Theobroma cacao TCM_011166 I 0.699
evm.TU.supercontig_7.78 Carica papaya evm.TU.supercontig_7.78 I 0.699
Aquca_002_01368 Aquilegia coerulea Aquca_002_01368 I 0.699
VIT_10s0003g01380 Vitis vinifera VIT_10s0003g01380 I 0.699
POPTR_0010s10990 Populus trichocarpa POPTR_0010s10990 I 0.699
SapurV1A.0203s0150 Salix purpurea SapurV1A.0203s0150 I 0.699
29780.m001368 Ricinus communis 29780.m001368 I 0.699
SapurV1A.0015s0960 Salix purpurea SapurV1A.0015s0960 I 0.699
cassava20298.m1 Manihot esculenta cassava20298.m1 I 0.699
VIT_01s0137g00050 Vitis vinifera VIT_01s0137g00050 I 0.699
GSMUA_Achr2G11010_001 Musa acuminata GSMUA_Achr2G11010_001 I 0.699
mgf017043m Mimulus guttatus mgf017043m I 0.695
MTR_2g023580 Medicago truncatula MTR_2g023580 I 0.694
SapurV1A.0566s0220 Salix purpurea SapurV1A.0566s0220 I 0.692
SapurV1A.0106s0010 Salix purpurea SapurV1A.0106s0010 I 0.692
Bo3g036170 Brassica oleracea Bo3g036170 I 0.692
Carubv10024503m.g Capsella rubella Carubv10024503m.g I 0.692
Cagra.0202s0047 Capsella grandiflora Cagra.0202s0047 I 0.692
Bostr.25993s0515 Boechera stricta Bostr.25993s0515 I 0.692
POPTR_0008s14140 Populus trichocarpa POPTR_0008s14140 I 0.692
Solyc10g076460.1 Solanum lycopersicum Solyc10g076460.1 I 0.692
GLYMA03G06620 Glycine max GLYMA03G06620 I 0.689
Lus10040945.g Linum usitatissimum Lus10040945.g I 0.688
mgf019744m Mimulus guttatus mgf019744m I 0.688
Pm010236 Prunus mume Pm010236 I 0.688
Gorai.009G161800 Gossypium raimondii Gorai.009G161800 I 0.686
MDP0000321302 Malus domestica MDP0000321302 I 0.684
PK23854.1 Cannabis sativa PK23854.1 I 0.684
orange1.1g020303m.g Citrus sinensis orange1.1g020303m.g I 0.684
fgenesh1_pm.C_scaffold_4002002 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002002 I 0.684
AT2G42660 Arabidopsis thaliana AT2G42660 I 0.684
estExt_fgenesh1_pg.C_1660037 Physcomitrella patens estExt_fgenesh1_pg.C_1660037 I 0.684
MDP0000234120 Malus domestica MDP0000234120 I 0.684
Ciclev10005466m.g Citrus clementina Ciclev10005466m.g I 0.684
Gorai.010G181100 Gossypium raimondii Gorai.010G181100 I 0.681
Gorai.009G329400 Gossypium raimondii Gorai.009G329400 I 0.678
estExt_fgenesh2_pg.C_1370060 Physcomitrella patens estExt_fgenesh2_pg.C_1370060 I 0.677
gene00600-v1.0-hybrid Fragaria vesca gene00600-v1.0-hybrid I 0.677
VIT_13s0067g01500 Vitis vinifera VIT_13s0067g01500 I 0.676
Sb05g000480 Sorghum bicolor Sb05g000480 I 0.676
Ciclev10015819m.g Citrus clementina Ciclev10015819m.g I 0.673
orange1.1g038268m.g Citrus sinensis orange1.1g038268m.g I 0.673
POPTR_0011s07270 Populus trichocarpa POPTR_0011s07270 I 0.670
SELMODRAFT_414222 Selaginella moellendorffii SELMODRAFT_414222 I 0.670
SELMODRAFT_422768 Selaginella moellendorffii SELMODRAFT_422768 I 0.670
fgenesh2_pg.scaffold_82000058 Physcomitrella patens fgenesh2_pg.scaffold_82000058 I 0.669
AMTR_s00025p00224230 Amborella trichopoda AMTR_s00025p00224230 I 0.668
OS11G0106100 Oryza sativa OS11G0106100 I 0.666
OS12G0105600 Oryza sativa OS12G0105600 I 0.666
BGIOSGA036796 Oryza indica BGIOSGA036796 I 0.666
ORUFI12G00420 Oryza rufipogon ORUFI12G00420 I 0.666
BGIOSGA036807 Oryza indica BGIOSGA036807 I 0.666
ONIVA11G00030 Oryza nivara ONIVA11G00030 I 0.666
OMERI11G00820 Oryza meridionalis OMERI11G00820 I 0.666
OMERI11G00630 Oryza meridionalis OMERI11G00630 I 0.666
OGLUM12G00290 Oryza glumaepatula OGLUM12G00290 I 0.666
OGLUM11G00320 Oryza glumaepatula OGLUM11G00320 I 0.666
ORUFI11G00320 Oryza rufipogon ORUFI11G00320 I 0.666
OBART11G00370 Oryza barthii OBART11G00370 I 0.666
ONIVA12G00410 Oryza nivara ONIVA12G00410 I 0.666
ORGLA11G0005200 Oryza glaberrima ORGLA11G0005200 I 0.666
OPUNC11G00360 Oryza punctata OPUNC11G00360 I 0.666
OPUNC12G00380 Oryza punctata OPUNC12G00380 I 0.666
Gorai.010G159700 Gossypium raimondii Gorai.010G159700 I 0.664
Lus10001149.g Linum usitatissimum Lus10001149.g I 0.663
BRADI4G26800 Brachypodium distachyon BRADI4G26800 I 0.662
gene19641-v1.0-hybrid Fragaria vesca gene19641-v1.0-hybrid I 0.661