CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh2_pg.C_730050
(
Physcomitrella patens
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
estExt_fgenesh2_pg.C_730050
T284730_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G40260
M07057_2.00
Arabidopsis thaliana
HHWDWAHATTCYHTN
NADRGAATDTWHWDD
Dap-seq
OMalley et al.(2016)
AT2G40260_col_a
0.689
0.681
AT2G40260
M07058_2.00
Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT
ADRGAATDTWHHNDDWHHNN
Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a
0.689
0.681
PK26523.1
M01283_2.00
Cannabis sativa
NWHATTCYNN
NNRGAATDWN
PBM
Lambert et al.(2019)
pTH11304
0.674
0.702
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_730050
Myb
516
578
RLNWTDDLRRCFIRAIEELGGPQSEKINLLKSSSEATPKAILHTMNVSGLKIAHIKSHLQMYR
Links
Other
Myb/SANT
family TFs
Other
Physcomitrella patens
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
estExt_fgenesh2_pg.C_1370060
Physcomitrella patens
estExt_fgenesh2_pg.C_1370060
I
0.761
SapurV1A.0042s0270
Salix purpurea
SapurV1A.0042s0270
I
0.692
orange1.1g041956m.g
Citrus sinensis
orange1.1g041956m.g
I
0.692
Ciclev10029989m.g
Citrus clementina
Ciclev10029989m.g
I
0.692
Carubv10023302m.g
Capsella rubella
Carubv10023302m.g
I
0.689
Cagra.7053s0009
Capsella grandiflora
Cagra.7053s0009
I
0.689
Thhalv10016733m.g
Eutrema salsugineum
Thhalv10016733m.g
I
0.689
AT2G40260
Arabidopsis thaliana
AT2G40260
D
0.689
Bo4g188940
Brassica oleracea
Bo4g188940
I
0.689
fgenesh1_pm.C_scaffold_4001775
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_4001775
I
0.689
Lus10040945.g
Linum usitatissimum
Lus10040945.g
I
0.680
MDP0000617021
Malus domestica
MDP0000617021
I
0.680
POPTR_0016s12940
Populus trichocarpa
POPTR_0016s12940
I
0.680
SapurV1A.0905s0010
Salix purpurea
SapurV1A.0905s0010
I
0.674
PK26523.1
Cannabis sativa
PK26523.1
D
0.674
cassava41268.m1
Manihot esculenta
cassava41268.m1
I
0.674
SapurV1A.0650s0140
Salix purpurea
SapurV1A.0650s0140
I
0.674
cassava33845.m1
Manihot esculenta
cassava33845.m1
I
0.674
Gorai.009G112300
Gossypium raimondii
Gorai.009G112300
I
0.674
evm.TU.supercontig_19.148
Carica papaya
evm.TU.supercontig_19.148
I
0.674
Eucgr.J00182
Eucalyptus grandis
Eucgr.J00182
I
0.674
29814.m000747
Ricinus communis
29814.m000747
I
0.674
POPTR_0009s07890
Populus trichocarpa
POPTR_0009s07890
I
0.674
POPTR_0010s19310
Populus trichocarpa
POPTR_0010s19310
I
0.674
POPTR_0001s28690
Populus trichocarpa
POPTR_0001s28690
I
0.674
OB12G10410
Oryza brachyantha
OB12G10410
I
0.674
GSMUA_Achr7G22410_001
Musa acuminata
GSMUA_Achr7G22410_001
I
0.674
cassava21831.m1
Manihot esculenta
cassava21831.m1
I
0.674
PRUPE_ppa025397mg
Prunus persica
PRUPE_ppa025397mg
I
0.674
Pm018961
Prunus mume
Pm018961
I
0.674
AMTR_s00021p00013790
Amborella trichopoda
AMTR_s00021p00013790
I
0.674
27757.m000022
Ricinus communis
27757.m000022
I
0.674
TCM_042189
Theobroma cacao
TCM_042189
I
0.674
TCM_042463
Theobroma cacao
TCM_042463
I
0.674
Solyc02g076670.2
Solanum lycopersicum
Solyc02g076670.2
I
0.665
PGSC0003DMG400010194
Solanum tuberosum
PGSC0003DMG400010194
I
0.665
VIT_06s0004g07000
Vitis vinifera
VIT_06s0004g07000
I
0.664
POPTR_0008s07170
Populus trichocarpa
POPTR_0008s07170
I
0.663
SapurV1A.0061s0540
Salix purpurea
SapurV1A.0061s0540
I
0.663