estExt_fgenesh2_pg.C_730050 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 estExt_fgenesh2_pg.C_730050 T284730_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G40260
M07057_2.00
Arabidopsis thaliana
HHWDWAHATTCYHTN

NADRGAATDTWHWDD
Dap-seq
OMalley et al.(2016)
AT2G40260_col_a
0.689 0.681
AT2G40260
M07058_2.00
Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT

ADRGAATDTWHHNDDWHHNN
Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a
0.689 0.681
PK26523.1
M01283_2.00
Cannabis sativa
NWHATTCYNN

NNRGAATDWN
PBM
Lambert et al.(2019)
pTH11304
0.674 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_730050 Myb 516 578

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK26523.1 Cannabis sativa PK26523.1 D 0.674
AT2G40260 Arabidopsis thaliana AT2G40260 D 0.689
Eucgr.J00182 Eucalyptus grandis Eucgr.J00182 I 0.674
Ciclev10029989m.g Citrus clementina Ciclev10029989m.g I 0.692
Carubv10023302m.g Capsella rubella Carubv10023302m.g I 0.689
Cagra.7053s0009 Capsella grandiflora Cagra.7053s0009 I 0.689
estExt_fgenesh2_pg.C_1370060 Physcomitrella patens estExt_fgenesh2_pg.C_1370060 I 0.761
cassava41268.m1 Manihot esculenta cassava41268.m1 I 0.674
cassava33845.m1 Manihot esculenta cassava33845.m1 I 0.674
evm.TU.supercontig_19.148 Carica papaya evm.TU.supercontig_19.148 I 0.674
Gorai.009G112300 Gossypium raimondii Gorai.009G112300 I 0.674
Lus10040945.g Linum usitatissimum Lus10040945.g I 0.680
MDP0000617021 Malus domestica MDP0000617021 I 0.680
orange1.1g041956m.g Citrus sinensis orange1.1g041956m.g I 0.692
SapurV1A.0042s0270 Salix purpurea SapurV1A.0042s0270 I 0.692
SapurV1A.0061s0540 Salix purpurea SapurV1A.0061s0540 I 0.663
SapurV1A.0650s0140 Salix purpurea SapurV1A.0650s0140 I 0.674
SapurV1A.0905s0010 Salix purpurea SapurV1A.0905s0010 I 0.674
Thhalv10016733m.g Eutrema salsugineum Thhalv10016733m.g I 0.689
cassava21831.m1 Manihot esculenta cassava21831.m1 I 0.674
29814.m000747 Ricinus communis 29814.m000747 I 0.674
Bo4g188940 Brassica oleracea Bo4g188940 I 0.689
fgenesh1_pm.C_scaffold_4001775 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001775 I 0.689
GSMUA_Achr7G22410_001 Musa acuminata GSMUA_Achr7G22410_001 I 0.674
OB12G10410 Oryza brachyantha OB12G10410 I 0.674
PGSC0003DMG400010194 Solanum tuberosum PGSC0003DMG400010194 I 0.665
POPTR_0001s28690 Populus trichocarpa POPTR_0001s28690 I 0.674
POPTR_0008s07170 Populus trichocarpa POPTR_0008s07170 I 0.663
POPTR_0009s07890 Populus trichocarpa POPTR_0009s07890 I 0.674
POPTR_0010s19310 Populus trichocarpa POPTR_0010s19310 I 0.674
POPTR_0016s12940 Populus trichocarpa POPTR_0016s12940 I 0.680
PRUPE_ppa025397mg Prunus persica PRUPE_ppa025397mg I 0.674
Solyc02g076670.2 Solanum lycopersicum Solyc02g076670.2 I 0.665
TCM_042189 Theobroma cacao TCM_042189 I 0.674
TCM_042463 Theobroma cacao TCM_042463 I 0.674
VIT_06s0004g07000 Vitis vinifera VIT_06s0004g07000 I 0.664
Pm018961 Prunus mume Pm018961 I 0.674
27757.m000022 Ricinus communis 27757.m000022 I 0.674
AMTR_s00021p00013790 Amborella trichopoda AMTR_s00021p00013790 I 0.674