CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgeneshNG_pg.C_380110
(
Naegleria gruberi
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
estExt_fgeneshNG_pg.C_380110
T284779_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RVE5
M01079_2.00
Arabidopsis thaliana
NWAATATCHN
NDGATATTWN
PBM
Sullivan et al.(2014)
pTH7138
0.726
0.674
RVE5
M07100_2.00
Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At4g01280_col_a
0.726
0.674
RVE5
M07101_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a
0.726
0.674
mybG
M02319_2.00
Dictyostelium discoideum
WAATATCT
AGATATTW
PBM
Weirauch et al.(2014)
pTH5362
0.708
0.674
RVE6
M01081_2.00
Arabidopsis thaliana
AATATCTD
HAGATATT
PBM
Sullivan et al.(2014)
pTH7151
0.702
0.674
RVE6
M07138_2.00
Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At5g52660_col_a
0.702
0.674
RVE6
M07139_2.00
Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN
Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a
0.702
0.674
RVE8
M01074_2.00
Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN
PBM
Sullivan et al.(2014)
pTH7136
0.692
0.674
RVE8
M07069_2.00
Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN
Dap-seq
OMalley et al.(2016)
At3g09600_col_a
0.692
0.674
RVE8
M07070_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a
0.692
0.674
PK02532.1
M02347_2.00
Cannabis sativa
WAATATCTN
NAGATATTW
PBM
Weirauch et al.(2014)
pTH9579
0.692
0.652
RVE4
M07117_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LCL1_colamp_a
0.692
0.652
RVE4
M07118_2.00
Arabidopsis thaliana
NAAAATATCT
AGATATTTTN
Dap-seq
OMalley et al.(2016)
LCL1_col
0.692
0.652
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN
NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.678
0.652
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT
AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.670
0.630
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.670
0.630
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW
WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.670
0.630
RVE7
M01069_2.00
Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN
PBM
Sullivan et al.(2014)
pTH7081
0.668
0.696
RVE7
M02286_2.00
Arabidopsis thaliana
NDARTATCH
DGATAYTHN
PBM
Weirauch et al.(2014)
pTH7277
0.668
0.696
RVE7L
M07071_2.00
Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN
Dap-seq
OMalley et al.(2016)
AT3G10113_col_a
0.668
0.696
RVE7
M07008_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
EPR1_colamp_a
0.668
0.696
RVE7
M07009_2.00
Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN
Dap-seq
OMalley et al.(2016)
EPR1_col
0.668
0.696
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgeneshNG_pg.C_380110
Myb
59
104
REKWSDEEHDKFIEAIRLHGRDWKKVEEFIGTKTRKQIRSHAQKHF
Links
Other
Myb/SANT
family TFs
Other
Naegleria gruberi
TFs
308 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy