CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgeneshPB_pm.C_510007
(
Phycomyces blakesleeanus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
estExt_fgeneshPB_pm.C_510007
T284791_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CDC5
M02698_2.00
Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN
SELEX
Mathelier et al.(2014)
MA0579.1
0.824
0.913
CDC5
M11037_2.00
Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN
Transfac
Matys et al.(2006)
P$CDC5_01
0.824
0.913
CDC5L
M11049_2.00
Homo sapiens
GWKTTAAYRTAD
HTAYRTTAAMWC
Transfac
Matys et al.(2006)
V$CDC5_01
0.783
0.859
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgeneshPB_pm.C_510007
Myb
7
53
GGVWKNTEDEILKAAVSKYGKNQWARISSLLVRKSPKQCKARWYEWL
estExt_fgeneshPB_pm.C_510007
Myb
59
103
KTEWSKEEDEKLLHLAKLMPTQWRTIAPIVGRTPAQCLERYQRLL
Links
Other
Myb/SANT
family TFs
Other
Phycomyces blakesleeanus
TFs
550 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy