fgenesh1_pg.scaffold_420000003 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 fgenesh1_pg.scaffold_420000003 T284911_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB61
M07002_2.00
Arabidopsis thaliana
HNYAMCHACCDNHNH

DNDNHGGTDGKTRND
Dap-seq
OMalley et al.(2016)
MYB61_col_a
0.670 0.699
MYB61
M07003_2.00
Arabidopsis thaliana
NHNYACCWAMCDH

DHGKTWGGTRNDN
Dap-seq
OMalley et al.(2016)
MYB61_colamp_a
0.670 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_420000003 Myb 14 61
fgenesh1_pg.scaffold_420000003 Myb 67 112

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
estExt_gwp_gw1.C_780109 Physcomitrella patens estExt_gwp_gw1.C_780109 N 0.830
gw1.433.32.1 Physcomitrella patens gw1.433.32.1 I 0.747
GSMUA_Achr5G05910_001 Musa acuminata GSMUA_Achr5G05910_001 I 0.720
AMTR_s00049p00074250 Amborella trichopoda AMTR_s00049p00074250 I 0.717
Eucgr.K00153 Eucalyptus grandis Eucgr.K00153 I 0.707
Carubv10003172m.g Capsella rubella Carubv10003172m.g I 0.704
Cagra.14303s0002 Capsella grandiflora Cagra.14303s0002 I 0.704
Solyc04g014470.2 Solanum lycopersicum Solyc04g014470.2 I 0.698
Cla004104 Citrullus lanatus Cla004104 I 0.696
Cucsa.156340 Cucumis sativus Cucsa.156340 I 0.696
Eucgr.J02279 Eucalyptus grandis Eucgr.J02279 I 0.695
BRADI3G36370 Brachypodium distachyon BRADI3G36370 I 0.694
Lus10032117.g Linum usitatissimum Lus10032117.g I 0.693
gene28021-v1.0-hybrid Fragaria vesca gene28021-v1.0-hybrid I 0.692
Pm015564 Prunus mume Pm015564 I 0.692
evm.TU.supercontig_1097.3 Carica papaya evm.TU.supercontig_1097.3 I 0.692
cassava17364.m1 Manihot esculenta cassava17364.m1 I 0.692
AtMYB40 Vitis vinifera VIT_14s0219g00050 I 0.692
mgf018940m Mimulus guttatus mgf018940m I 0.692
PRUPE_ppa026877mg Prunus persica PRUPE_ppa026877mg I 0.692
Ciclev10017764m.g Citrus clementina Ciclev10017764m.g I 0.692
MDP0000241111 Malus domestica MDP0000241111 I 0.688
MDP0000303239 Malus domestica MDP0000303239 I 0.688
Aquca_011_00323 Aquilegia coerulea Aquca_011_00323 I 0.687
Bostr.25463s0081 Boechera stricta Bostr.25463s0081 I 0.687
cassava3745.m1 Manihot esculenta cassava3745.m1 I 0.685
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.683
Eucgr.I01698 Eucalyptus grandis Eucgr.I01698 I 0.683
Gorai.006G037500 Gossypium raimondii Gorai.006G037500 I 0.683
GLYMA16G06900 Glycine max GLYMA16G06900 I 0.683
Gorai.008G238800 Gossypium raimondii Gorai.008G238800 I 0.683
TCM_017051 Theobroma cacao TCM_017051 I 0.683
Pavir.J21364 Panicum virgatum Pavir.J21364 I 0.682
Ca_19393 Cicer arietinum Ca_19393 I 0.682
Pavir.Bb01873 Panicum virgatum Pavir.Bb01873 I 0.682
GLYMA05G06410 Glycine max GLYMA05G06410 I 0.682
ORUFI02G33090 Oryza rufipogon ORUFI02G33090 I 0.681
Pavir.Aa00435 Panicum virgatum Pavir.Aa00435 I 0.681
Si020225m.g Setaria italica Si020225m.g I 0.681
OS02G0732600 Oryza sativa OS02G0732600 I 0.681
Sb04g028850 Sorghum bicolor Sb04g028850 I 0.681
GRMZM2G055158 Zea mays GRMZM2G055158 I 0.681
PGSC0003DMG400015668 Solanum tuberosum PGSC0003DMG400015668 I 0.681
BGIOSGA005676 Oryza indica BGIOSGA005676 I 0.681
ORGLA02G0269000 Oryza glaberrima ORGLA02G0269000 I 0.681
OB02G38450 Oryza brachyantha OB02G38450 I 0.681
OGLUM02G32070 Oryza glumaepatula OGLUM02G32070 I 0.681
Solyc11g011050.1 Solanum lycopersicum Solyc11g011050.1 I 0.681
PGSC0003DMG400012648 Solanum tuberosum PGSC0003DMG400012648 I 0.680
Solyc02g093740.2 Solanum lycopersicum Solyc02g093740.2 I 0.680
29929.m004749 Ricinus communis 29929.m004749 I 0.679
GLYMA19G07830 Glycine max GLYMA19G07830 I 0.679
Si014144m.g Setaria italica Si014144m.g I 0.679
Aquca_013_00661 Aquilegia coerulea Aquca_013_00661 I 0.678
Lus10038913.g Linum usitatissimum Lus10038913.g I 0.677
POPTR_0012s14540 Populus trichocarpa POPTR_0012s14540 I 0.677
SapurV1A.0367s0020 Salix purpurea SapurV1A.0367s0020 I 0.677
POPTR_0013s00290 Populus trichocarpa POPTR_0013s00290 I 0.677
VIT_16s0022g01210 Vitis vinifera VIT_16s0022g01210 I 0.677
SapurV1A.0456s0310 Salix purpurea SapurV1A.0456s0310 I 0.677
Cla003626 Citrullus lanatus Cla003626 I 0.677
cassava47045.m1 Manihot esculenta cassava47045.m1 I 0.677
Solyc05g014290.2 Solanum lycopersicum Solyc05g014290.2 I 0.677
SapurV1A.0442s0250 Salix purpurea SapurV1A.0442s0250 I 0.677
TCM_014956 Theobroma cacao TCM_014956 I 0.677
Cucsa.115620 Cucumis sativus Cucsa.115620 I 0.677
Ciclev10005666m.g Citrus clementina Ciclev10005666m.g I 0.677
evm.TU.supercontig_3.300 Carica papaya evm.TU.supercontig_3.300 I 0.677
orange1.1g024849m.g Citrus sinensis orange1.1g024849m.g I 0.677
GSMUA_Achr9G15640_001 Musa acuminata GSMUA_Achr9G15640_001 I 0.677
gene21264-v1.0-hybrid Fragaria vesca gene21264-v1.0-hybrid I 0.677
BRADI3G42430 Brachypodium distachyon BRADI3G42430 I 0.676
Eucgr.J01601 Eucalyptus grandis Eucgr.J01601 I 0.675
Lus10002296.g Linum usitatissimum Lus10002296.g I 0.675
PDK_20s1306131g002 Phoenix dactylifera PDK_20s1306131g002 I 0.675
Lus10004043.g Linum usitatissimum Lus10004043.g I 0.675
Bra020016 Brassica rapa Bra020016 I 0.675
POPTR_0001s36220 Populus trichocarpa POPTR_0001s36220 I 0.675
Gorai.003G168100 Gossypium raimondii Gorai.003G168100 I 0.674
gene32268-v1.0-hybrid Fragaria vesca gene32268-v1.0-hybrid I 0.674
cassava33331.m1 Manihot esculenta cassava33331.m1 I 0.674
SapurV1A.0634s0020 Salix purpurea SapurV1A.0634s0020 I 0.674
Eucgr.D02014 Eucalyptus grandis Eucgr.D02014 I 0.674
orange1.1g024441m.g Citrus sinensis orange1.1g024441m.g I 0.674
cassava2058.valid.m1 Manihot esculenta cassava2058.valid.m1 I 0.674
Pm023573 Prunus mume Pm023573 I 0.674
Aquca_011_00322 Aquilegia coerulea Aquca_011_00322 I 0.674
30190.m011004 Ricinus communis 30190.m011004 I 0.674
Gorai.004G201900 Gossypium raimondii Gorai.004G201900 I 0.674
Cla011736 Citrullus lanatus Cla011736 I 0.674
VIT_00s1241g00010 Vitis vinifera VIT_00s1241g00010 I 0.674
SapurV1A.0045s0090 Salix purpurea SapurV1A.0045s0090 I 0.674
Ciclev10021695m.g Citrus clementina Ciclev10021695m.g I 0.674
TCM_016054 Theobroma cacao TCM_016054 I 0.674
PRUPE_ppa021568mg Prunus persica PRUPE_ppa021568mg I 0.674
GLYMA05G03780 Glycine max GLYMA05G03780 I 0.674
POPTR_0003s11360 Populus trichocarpa POPTR_0003s11360 I 0.674
POPTR_0001s07830 Populus trichocarpa POPTR_0001s07830 I 0.674
PGSC0003DMG400004780 Solanum tuberosum PGSC0003DMG400004780 I 0.674
Si030711m.g Setaria italica Si030711m.g I 0.674
GLYMA17G14291 Glycine max GLYMA17G14291 I 0.674
Solyc08g079270.2 Solanum lycopersicum Solyc08g079270.2 I 0.674
Si032544m.g Setaria italica Si032544m.g I 0.674
OB09G24070 Oryza brachyantha OB09G24070 I 0.673
Traes_7DS_5100A9609 Triticum aestivum Traes_7DS_5100A9609 I 0.673
Pavir.J36915 Panicum virgatum Pavir.J36915 I 0.673
BGIOSGA026529 Oryza indica BGIOSGA026529 I 0.673
ORGLA09G0137500 Oryza glaberrima ORGLA09G0137500 I 0.673
ORGLA08G0217800 Oryza glaberrima ORGLA08G0217800 I 0.673
OB08G29480 Oryza brachyantha OB08G29480 I 0.673
BGIOSGA029380 Oryza indica BGIOSGA029380 I 0.673
GRMZM2G138427 Zea mays GRMZM2G138427 I 0.673
Pavir.Fb02321 Panicum virgatum Pavir.Fb02321 I 0.673
F775_29159 Aegilops tauschii F775_29159 I 0.673
F775_19511 Aegilops tauschii F775_19511 I 0.673
ORUFI08G25210 Oryza rufipogon ORUFI08G25210 I 0.673
GRMZM2G037650 Zea mays GRMZM2G037650 I 0.673
Pavir.Da01229 Panicum virgatum Pavir.Da01229 I 0.673
GRMZM2G048910 Zea mays GRMZM2G048910 I 0.673
MLOC_14021 Hordeum vulgare MLOC_14021 I 0.673
OLONG_005336 Oryza longistaminata OLONG_005336 I 0.673
OS09G0532900 Oryza sativa OS09G0532900 I 0.673
Traes_5BL_30D8E6BE2 Triticum aestivum Traes_5BL_30D8E6BE2 I 0.673
Traes_5DL_0B2C5ADF6 Triticum aestivum Traes_5DL_0B2C5ADF6 I 0.673
Sb10g009330 Sorghum bicolor Sb10g009330 I 0.673
Pavir.Ab02913 Panicum virgatum Pavir.Ab02913 I 0.671
Ca_08722 Cicer arietinum Ca_08722 I 0.670
MYB61 Arabidopsis lyrata scaffold_100991.1 I 0.670
Pavir.Fb01563 Panicum virgatum Pavir.Fb01563 I 0.670
Pavir.Fa00850 Panicum virgatum Pavir.Fa00850 I 0.670
MDP0000682032 Malus domestica MDP0000682032 I 0.670
MTR_4g102380 Medicago truncatula MTR_4g102380 I 0.670
MYB61 Arabidopsis thaliana AT1G09540 D 0.670
Carubv10009497m.g Capsella rubella Carubv10009497m.g I 0.670
Cagra.4395s0139 Capsella grandiflora Cagra.4395s0139 I 0.670
Bostr.25494s0012 Boechera stricta Bostr.25494s0012 I 0.670
PK08857.1 Cannabis sativa PK08857.1 I 0.670
chr4.CM0126.370.nd Lotus japonicus chr4.CM0126.370.nd I 0.670
LPERR08G19430 Leersia perrieri LPERR08G19430 I 0.669
POPTR_0017s02850 Populus trichocarpa POPTR_0017s02850 I 0.668
POPTR_0004s08480 Populus trichocarpa POPTR_0004s08480 I 0.668
SapurV1A.1318s0060 Salix purpurea SapurV1A.1318s0060 I 0.668
SapurV1A.0390s0060 Salix purpurea SapurV1A.0390s0060 I 0.668
SapurV1A.0102s0470 Salix purpurea SapurV1A.0102s0470 I 0.668
PRUPE_ppa011549mg Prunus persica PRUPE_ppa011549mg I 0.666
Pm019472 Prunus mume Pm019472 I 0.666
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.666
POPTR_0012s13240 Populus trichocarpa POPTR_0012s13240 I 0.666
SapurV1A.1253s0080 Salix purpurea SapurV1A.1253s0080 I 0.666
Thhalv10008000m.g Eutrema salsugineum Thhalv10008000m.g I 0.666
Bo3g165540 Brassica oleracea Bo3g165540 I 0.665
Pavir.Db01743 Panicum virgatum Pavir.Db01743 I 0.665
Si031939m.g Setaria italica Si031939m.g I 0.665
Pavir.Ba02150 Panicum virgatum Pavir.Ba02150 I 0.665
GSMUA_Achr6G06800_001 Musa acuminata GSMUA_Achr6G06800_001 I 0.665
BGIOSGA001460 Oryza indica BGIOSGA001460 I 0.665
cassava21367.m1 Manihot esculenta cassava21367.m1 I 0.665
ORUFI01G21210 Oryza rufipogon ORUFI01G21210 I 0.665
GSMUA_Achr4G19880_001 Musa acuminata GSMUA_Achr4G19880_001 I 0.665
OB06G19130 Oryza brachyantha OB06G19130 I 0.664
BGIOSGA022649 Oryza indica BGIOSGA022649 I 0.664
OS06G0258000 Oryza sativa OS06G0258000 I 0.664
ORGLA06G0093500 Oryza glaberrima ORGLA06G0093500 I 0.664
ORUFI06G10280 Oryza rufipogon ORUFI06G10280 I 0.664
F775_17058 Aegilops tauschii F775_17058 I 0.664
Si007017m.g Setaria italica Si007017m.g I 0.664
BRADI4G36210 Brachypodium distachyon BRADI4G36210 I 0.664
mgf024107m Mimulus guttatus mgf024107m I 0.664
BRADI3G56917 Brachypodium distachyon BRADI3G56917 I 0.664
TRIUR3_16495 Triticum urartu TRIUR3_16495 I 0.664
MLOC_6696 Hordeum vulgare MLOC_6696 I 0.662
cassava15064.m1 Manihot esculenta cassava15064.m1 I 0.662
BGIOSGA001461 Oryza indica BGIOSGA001461 I 0.661
OB09G16260 Oryza brachyantha OB09G16260 I 0.661
ONIVA01G21360 Oryza nivara ONIVA01G21360 I 0.661
ORGLA01G0154000 Oryza glaberrima ORGLA01G0154000 I 0.661
Sb07g024970 Sorghum bicolor Sb07g024970 I 0.661
OMERI01G17650 Oryza meridionalis OMERI01G17650 I 0.661
OGLUM01G22380 Oryza glumaepatula OGLUM01G22380 I 0.661
OB01G28670 Oryza brachyantha OB01G28670 I 0.661
OBART01G18830 Oryza barthii OBART01G18830 I 0.661
LPERR01G16340 Leersia perrieri LPERR01G16340 I 0.661