fgenesh1_pm.scaffold_371000001 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 fgenesh1_pm.scaffold_371000001 T284933_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.672 0.707
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.scaffold_371000001 Myb 17 64
fgenesh1_pm.scaffold_371000001 Myb 70 114

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.61.201.1 Physcomitrella patens e_gw1.61.201.1 I 0.845
POPTR_0018s05530 Populus trichocarpa POPTR_0018s05530 I 0.739
PDK_20s1310471g002 Phoenix dactylifera PDK_20s1310471g002 I 0.731
PDK_20s1918041g001 Phoenix dactylifera PDK_20s1918041g001 I 0.730
GLYMA10G35050 Glycine max GLYMA10G35050 I 0.720
POPTR_0018s05750 Populus trichocarpa POPTR_0018s05750 I 0.715
e_gw1.6.239.1 Physcomitrella patens e_gw1.6.239.1 I 0.714
POPTR_0018s05740 Populus trichocarpa POPTR_0018s05740 I 0.708
30068.m002544 Ricinus communis 30068.m002544 I 0.707
SapurV1A.0059s0150 Salix purpurea SapurV1A.0059s0150 I 0.707
POPTR_0003s14420 Populus trichocarpa POPTR_0003s14420 I 0.707
POPTR_0001s11100 Populus trichocarpa POPTR_0001s11100 I 0.707
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.706
Bra039395 Brassica rapa Bra039395 I 0.705
Bo1g138250 Brassica oleracea Bo1g138250 I 0.702
Cla011528 Citrullus lanatus Cla011528 I 0.701
Eucgr.D01701 Eucalyptus grandis Eucgr.D01701 I 0.701
Eucgr.C00724 Eucalyptus grandis Eucgr.C00724 I 0.699
SapurV1A.0710s0050 Salix purpurea SapurV1A.0710s0050 I 0.698
Eucgr.C00826 Eucalyptus grandis Eucgr.C00826 I 0.698
cassava7672.valid.m1 Manihot esculenta cassava7672.valid.m1 I 0.695
VIT_04s0008g01800 Vitis vinifera VIT_04s0008g01800 I 0.695
Eucgr.C00721 Eucalyptus grandis Eucgr.C00721 I 0.695
TCM_037376 Theobroma cacao TCM_037376 I 0.695
orange1.1g036215m.g Citrus sinensis orange1.1g036215m.g I 0.695
TCM_037555 Theobroma cacao TCM_037555 I 0.695
Bra027423 Brassica rapa Bra027423 I 0.695
Pm005570 Prunus mume Pm005570 I 0.692
PRUPE_ppa022205mg Prunus persica PRUPE_ppa022205mg I 0.692
POPTR_0006s23840 Populus trichocarpa POPTR_0006s23840 I 0.692
SapurV1A.0710s0070 Salix purpurea SapurV1A.0710s0070 I 0.692
MDP0000210851 Malus domestica MDP0000210851 I 0.692
MDP0000031172 Malus domestica MDP0000031172 I 0.692
Gorai.004G130900 Gossypium raimondii Gorai.004G130900 I 0.692
SapurV1A.0035s0030 Salix purpurea SapurV1A.0035s0030 I 0.692
cassava34176.m1 Manihot esculenta cassava34176.m1 I 0.692
Gorai.008G126700 Gossypium raimondii Gorai.008G126700 I 0.691
MDP0000915330 Malus domestica MDP0000915330 I 0.691
PK14784.1 Cannabis sativa PK14784.1 I 0.691
gene18691-v1.0-hybrid Fragaria vesca gene18691-v1.0-hybrid I 0.691
cassava29820.valid.m1 Manihot esculenta cassava29820.valid.m1 I 0.691
Eucgr.D02390 Eucalyptus grandis Eucgr.D02390 I 0.691
TCM_010778 Theobroma cacao TCM_010778 I 0.690
Eucgr.C03555 Eucalyptus grandis Eucgr.C03555 I 0.689
Pm018338 Prunus mume Pm018338 I 0.688
PRUPE_ppa009439mg Prunus persica PRUPE_ppa009439mg I 0.688
Ca_01329 Cicer arietinum Ca_01329 I 0.688
MTR_7g117730 Medicago truncatula MTR_7g117730 I 0.688
MYB5 Arabidopsis thaliana AT3G13540 I 0.685
Thhalv10022057m.g Eutrema salsugineum Thhalv10022057m.g I 0.685
ATMYB5 Arabidopsis lyrata scaffold_301556.1 I 0.685
GLYMA20G32510 Glycine max GLYMA20G32510 I 0.685
Bostr.3640s0147 Boechera stricta Bostr.3640s0147 I 0.685
Eucgr.C03151 Eucalyptus grandis Eucgr.C03151 I 0.684
cassava28702.m1 Manihot esculenta cassava28702.m1 I 0.684
Ca_17627 Cicer arietinum Ca_17627 I 0.684
AMTR_s00024p00250970 Amborella trichopoda AMTR_s00024p00250970 I 0.684
TCM_000535 Theobroma cacao TCM_000535 I 0.683
GLYMA07G05960 Glycine max GLYMA07G05960 I 0.683
GLYMA16G02570 Glycine max GLYMA16G02570 I 0.683
SapurV1A.0035s0040 Salix purpurea SapurV1A.0035s0040 I 0.683
POPTR_0002s17460 Populus trichocarpa POPTR_0002s17460 I 0.682
PK16315.1 Cannabis sativa PK16315.1 I 0.682
GLYMA17G05831 Glycine max GLYMA17G05831 I 0.682
GLYMA13G16890 Glycine max GLYMA13G16890 I 0.682
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I 0.681
Eucgr.B00866 Eucalyptus grandis Eucgr.B00866 I 0.681
SapurV1A.1276s0060 Salix purpurea SapurV1A.1276s0060 I 0.681
cassava36365.valid.m1 Manihot esculenta cassava36365.valid.m1 I 0.681
gene15391-v1.0-hybrid Fragaria vesca gene15391-v1.0-hybrid N 0.680
PK13689.1 Cannabis sativa PK13689.1 I 0.678
evm.TU.supercontig_96.57 Carica papaya evm.TU.supercontig_96.57 I 0.677
TCM_004509 Theobroma cacao TCM_004509 I 0.677
Cucsa.304110 Cucumis sativus Cucsa.304110 I 0.677
SELMODRAFT_127220 Selaginella moellendorffii SELMODRAFT_127220 I 0.676
SELMODRAFT_98669 Selaginella moellendorffii SELMODRAFT_98669 I 0.676
MTR_8g027345 Medicago truncatula MTR_8g027345 I 0.676
VIT_15s0046g00170 Vitis vinifera VIT_15s0046g00170 I 0.676
LjT20L14.140.nd Lotus japonicus LjT20L14.140.nd I 0.676
Gorai.001G020600 Gossypium raimondii Gorai.001G020600 I 0.676
GLYMA16G00931 Glycine max GLYMA16G00931 I 0.676
PDK_20s1716541g001 Phoenix dactylifera PDK_20s1716541g001 I 0.675
Solyc12g049300.1 Solanum lycopersicum Solyc12g049300.1 I 0.675
Aquca_009_00493 Aquilegia coerulea Aquca_009_00493 I 0.674
Cagra.0690s0007 Capsella grandiflora Cagra.0690s0007 I 0.674
Carubv10014443m.g Capsella rubella Carubv10014443m.g I 0.674
evm.TU.supercontig_25.114 Carica papaya evm.TU.supercontig_25.114 I 0.673
AMTR_s00024p00224850 Amborella trichopoda AMTR_s00024p00224850 I 0.672
Carubv10019345m.g Capsella rubella Carubv10019345m.g I 0.672
Q2TCH0_PETHY Petunia x hybrida Q2TCH0_PETHY D 0.672
Cagra.13170s0007 Capsella grandiflora Cagra.13170s0007 I 0.672
Gorai.004G151000 Gossypium raimondii Gorai.004G151000 I 0.672
OB06G16110 Oryza brachyantha OB06G16110 I 0.671
gene15392-v1.0-hybrid Fragaria vesca gene15392-v1.0-hybrid I 0.671
Eucgr.E01031 Eucalyptus grandis Eucgr.E01031 I 0.671
POPTR_0014s09630 Populus trichocarpa POPTR_0014s09630 I 0.670
SapurV1A.0013s0160 Salix purpurea SapurV1A.0013s0160 I 0.670
MDP0000157940 Malus domestica MDP0000157940 I 0.670
Eucgr.K01504 Eucalyptus grandis Eucgr.K01504 I 0.670
Bo3g149450 Brassica oleracea Bo3g149450 I 0.668
POPTR_0003s14430 Populus trichocarpa POPTR_0003s14430 I 0.668
SapurV1A.0059s0160 Salix purpurea SapurV1A.0059s0160 I 0.668
Gorai.001G020500 Gossypium raimondii Gorai.001G020500 N 0.668
ORGLA03G0196700 Oryza glaberrima ORGLA03G0196700 I 0.668
POPTR_0019s05210 Populus trichocarpa POPTR_0019s05210 I 0.667
GSMUA_Achr5G06530_001 Musa acuminata GSMUA_Achr5G06530_001 I 0.667
SapurV1A.0598s0010 Salix purpurea SapurV1A.0598s0010 I 0.667
GLYMA07G04240 Glycine max GLYMA07G04240 I 0.667
VIT_09s0002g01410 Vitis vinifera VIT_09s0002g01410 I 0.667
Gorai.001G020400 Gossypium raimondii Gorai.001G020400 I 0.666
Pm005571 Prunus mume Pm005571 I 0.666
evm.TU.supercontig_51.138 Carica papaya evm.TU.supercontig_51.138 I 0.666
LjSGA_029658.1 Lotus japonicus LjSGA_029658.1 I 0.665
PRUPE_ppa010252mg Prunus persica PRUPE_ppa010252mg I 0.665
OS05G0429900 Oryza sativa OS05G0429900 I 0.665
BGIOSGA018002 Oryza indica BGIOSGA018002 I 0.665
TCM_037377 Theobroma cacao TCM_037377 I 0.665
TCM_029121 Theobroma cacao TCM_029121 I 0.665
Gorai.010G087200 Gossypium raimondii Gorai.010G087200 I 0.665
ORUFI05G18670 Oryza rufipogon ORUFI05G18670 I 0.665
BRADI2G24400 Brachypodium distachyon BRADI2G24400 I 0.665
GSMUA_Achr6G04400_001 Musa acuminata GSMUA_Achr6G04400_001 I 0.665
MLOC_71041 Hordeum vulgare MLOC_71041 I 0.665
Pm013279 Prunus mume Pm013279 I 0.665
SELMODRAFT_120788 Selaginella moellendorffii SELMODRAFT_120788 I 0.664
SELMODRAFT_450007 Selaginella moellendorffii SELMODRAFT_450007 I 0.664
PRUPE_ppa010716mg Prunus persica PRUPE_ppa010716mg I 0.663
LjSGA_023691.1 Lotus japonicus LjSGA_023691.1 I 0.663
Gorai.001G015200 Gossypium raimondii Gorai.001G015200 I 0.663
chr1.CM0105.50.nd Lotus japonicus chr1.CM0105.50.nd I 0.663
Eucgr.C02096 Eucalyptus grandis Eucgr.C02096 I 0.663
SapurV1A.0130s0360 Salix purpurea SapurV1A.0130s0360 I 0.663
Pm014372 Prunus mume Pm014372 I 0.663
ORUFI09G19350 Oryza rufipogon ORUFI09G19350 I 0.662
gene07646-v1.0-hybrid Fragaria vesca gene07646-v1.0-hybrid I 0.662
BRADI2G56520 Brachypodium distachyon BRADI2G56520 I 0.662
Gorai.002G196700 Gossypium raimondii Gorai.002G196700 I 0.662
Gorai.008G035700 Gossypium raimondii Gorai.008G035700 I 0.662
orange1.1g023056m.g Citrus sinensis orange1.1g023056m.g I 0.662
Thhalv10014754m.g Eutrema salsugineum Thhalv10014754m.g I 0.662
ORGLA09G0141200 Oryza glaberrima ORGLA09G0141200 I 0.662
BGIOSGA004902 Oryza indica BGIOSGA004902 I 0.662
ORGLA11G0047500 Oryza glaberrima ORGLA11G0047500 I 0.662
ORGLA01G0328800 Oryza glaberrima ORGLA01G0328800 I 0.662
Thhalv10025886m.g Eutrema salsugineum Thhalv10025886m.g I 0.662
PK29029.1 Cannabis sativa PK29029.1 I 0.662
ONIVA11G05280 Oryza nivara ONIVA11G05280 I 0.662
AMTR_s00139p00079430 Amborella trichopoda AMTR_s00139p00079430 I 0.662
OPUNC11G04750 Oryza punctata OPUNC11G04750 I 0.662
BGIOSGA029363 Oryza indica BGIOSGA029363 I 0.662
Pavir.J01502 Panicum virgatum Pavir.J01502 I 0.662
Bo7g119670 Brassica oleracea Bo7g119670 I 0.662
Bra022602 Brassica rapa Bra022602 I 0.662
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.662
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.662
MDP0000249611 Malus domestica MDP0000249611 I 0.662
orange1.1g021503m.g Citrus sinensis orange1.1g021503m.g I 0.662
Pavir.Ea03682 Panicum virgatum Pavir.Ea03682 I 0.662
Pavir.Db02046 Panicum virgatum Pavir.Db02046 I 0.662
BGIOSGA034924 Oryza indica BGIOSGA034924 I 0.662
Bra033572 Brassica rapa Bra033572 I 0.662
GLYMA12G03600 Glycine max GLYMA12G03600 I 0.662
Ca_11026 Cicer arietinum Ca_11026 I 0.662
VIT_04s0023g03710 Vitis vinifera VIT_04s0023g03710 I 0.662
GSMUA_Achr6G07260_001 Musa acuminata GSMUA_Achr6G07260_001 I 0.662
VIT_03s0038g02310 Vitis vinifera VIT_03s0038g02310 I 0.662
AMTR_s00055p00057500 Amborella trichopoda AMTR_s00055p00057500 I 0.662
Cla020592 Citrullus lanatus Cla020592 I 0.662
GRMZM2G160838 Zea mays GRMZM2G160838 I 0.662
29602.m000218 Ricinus communis 29602.m000218 I 0.662
Pm020852 Prunus mume Pm020852 I 0.662
GSMUA_Achr2G20600_001 Musa acuminata GSMUA_Achr2G20600_001 I 0.662
TRIUR3_22555 Triticum urartu TRIUR3_22555 I 0.662
Traes_4DS_7BFAC49C2 Triticum aestivum Traes_4DS_7BFAC49C2 I 0.662
TCM_006638 Theobroma cacao TCM_006638 I 0.662
OGLUM11G04790 Oryza glumaepatula OGLUM11G04790 I 0.662
Solyc06g065100.2 Solanum lycopersicum Solyc06g065100.2 I 0.662
MTR_4g073420 Medicago truncatula MTR_4g073420 I 0.662
LPERR11G04310 Leersia perrieri LPERR11G04310 I 0.662
GSMUA_Achr9G08600_001 Musa acuminata GSMUA_Achr9G08600_001 I 0.662
Traes_4BS_6253482BD Triticum aestivum Traes_4BS_6253482BD I 0.662
Traes_4AL_CC5803BED Triticum aestivum Traes_4AL_CC5803BED I 0.662
TRAES3BF044400110CFD_g Triticum aestivum TRAES3BF044400110CFD_g I 0.662
GSMUA_Achr6G12930_001 Musa acuminata GSMUA_Achr6G12930_001 I 0.662
OB01G47670 Oryza brachyantha OB01G47670 I 0.662
cassava29150.valid.m1 Manihot esculenta cassava29150.valid.m1 I 0.662
GLYMA11G11450 Glycine max GLYMA11G11450 I 0.662
Solyc10g055410.1 Solanum lycopersicum Solyc10g055410.1 I 0.662
Ciclev10028908m.g Citrus clementina Ciclev10028908m.g I 0.662
Ciclev10002068m.g Citrus clementina Ciclev10002068m.g I 0.662
OS01G0874300 Oryza sativa OS01G0874300 I 0.662
Eucgr.C01374 Eucalyptus grandis Eucgr.C01374 I 0.662
Eucgr.I01406 Eucalyptus grandis Eucgr.I01406 I 0.662
F775_17298 Aegilops tauschii F775_17298 I 0.662
ATMYB4 Arabidopsis lyrata fgenesh2_kg.7__59__AT4G38620.1 I 0.662
ORUFI11G04860 Oryza rufipogon ORUFI11G04860 I 0.662
PRUPE_ppa010277mg Prunus persica PRUPE_ppa010277mg I 0.662
OS09G0538400 Oryza sativa OS09G0538400 I 0.662
Cucsa.234310 Cucumis sativus Cucsa.234310 I 0.662
OB11G14080 Oryza brachyantha OB11G14080 I 0.662
OB09G24400 Oryza brachyantha OB09G24400 I 0.662
cassava30431.valid.m1 Manihot esculenta cassava30431.valid.m1 I 0.662
OBART11G04950 Oryza barthii OBART11G04950 I 0.662
MLOC_69570 Hordeum vulgare MLOC_69570 I 0.662
Bostr.25542s0045 Boechera stricta Bostr.25542s0045 I 0.662
Aquca_006_00250 Aquilegia coerulea Aquca_006_00250 I 0.662
mgf012705m Mimulus guttatus mgf012705m I 0.662
PGSC0003DMG400031317 Solanum tuberosum PGSC0003DMG400031317 I 0.662
evm.TU.supercontig_37.149 Carica papaya evm.TU.supercontig_37.149 I 0.662
Ciclev10021571m.g Citrus clementina Ciclev10021571m.g I 0.661
TCM_004777 Theobroma cacao TCM_004777 I 0.661
TCM_037379 Theobroma cacao TCM_037379 I 0.661
Cla016084 Citrullus lanatus Cla016084 I 0.661
Cucsa.370600 Cucumis sativus Cucsa.370600 I 0.661
orange1.1g040841m.g Citrus sinensis orange1.1g040841m.g I 0.661