gw1.76.8.1 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gw1.76.8.1 T285135_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.785 0.806
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.785 0.806
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.781 0.817
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.781 0.817
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.766 0.860
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.766 0.860
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.76.8.1 Myb 4 50
gw1.76.8.1 Myb 56 101

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

385 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Alligator_sinensis_CCG021550.1 Alligator sinensis Alligator_sinensis_CCG021550.1 I 0.000
Cmyd_10001224 Chelonia mydas Cmyd_10001224 I 0.000
SALL2 Anolis carolinensis ENSACAG00000000030 I 0.000
ENSAMEG00000006226 Ailuropoda melanoleuca ENSAMEG00000006226 I 0.000
SALL2 Canis familiaris ENSCAFG00000005676 I 0.000
SALL2 Callithrix jacchus ENSCJAG00000008855 I 0.000
ENSCPOG00000001022 Cavia porcellus ENSCPOG00000001022 I 0.000
ENSCSAG00000016461 Chlorocebus sabaeus ENSCSAG00000016461 I 0.000
SALL2 Dasypus novemcinctus ENSDNOG00000032317 I 0.000
SALL2 Equus caballus ENSECAG00000024449 I 0.000
SALL2 Felis catus ENSFCAG00000026866 I 0.000
SALL2 Homo sapiens ENSG00000165821 D 0.000
SALL2 Gorilla gorilla ENSGGOG00000009133 I 0.000
SALL2 Loxodonta africana ENSLAFG00000032150 I 0.000
ENSMEUG00000000526 Macropus eugenii ENSMEUG00000000526 I 0.000
SALL2 Microcebus murinus ENSMICG00000015037 I 0.000
SALL2 Myotis lucifugus ENSMLUG00000009185 I 0.000
ENSMPUG00000000199 Mustela putorius furo ENSMPUG00000000199 I 0.000
ENSNLEG00000014602 Nomascus leucogenys ENSNLEG00000014602 I 0.000
ENSOARG00000019612 Ovis aries ENSOARG00000019612 I 0.000
SALL2 Oryctolagus cuniculus ENSOCUG00000027464 I 0.000
SALL2 Otolemur garnettii ENSOGAG00000031464 I 0.000
ENSP00000333537 Macaca fascicularis ENSP00000333537 I 0.000
ENSP00000333537-D1 Bos grunniens ENSP00000333537-D1 I 0.000
ENSPANG00000020006 Papio anubis ENSPANG00000020006 I 0.000
SALL2 Procavia capensis ENSPCAG00000006689 I 0.000
ENSPPYG00000005600 Pongo abelii ENSPPYG00000005600 I 0.000
SALL2 Pan troglodytes ENSPTRG00000006128 I 0.000
SALL2 Pteropus vampyrus ENSPVAG00000000277 I 0.000
SALL2 Sus scrofa ENSSSCG00000022705 I 0.000
ENSSTOG00000023637 Ictidomys tridecemlineatus ENSSTOG00000023637 I 0.000
SALL2 Tursiops truncatus ENSTTRG00000012842 I 0.000
Ogr13603 Ophisaurus gracilis Ogr13603 I 0.000