CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30011541m.g
(
Saccoglossus kowalevskii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Sakowv30011541m.g
T285456_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CDC5L
M11049_2.00
Homo sapiens
GWKTTAAYRTAD
HTAYRTTAAMWC
Transfac
Matys et al.(2006)
V$CDC5_01
0.889
0.957
CDC5
M02698_2.00
Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN
SELEX
Mathelier et al.(2014)
MA0579.1
0.821
0.902
CDC5
M11037_2.00
Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN
Transfac
Matys et al.(2006)
P$CDC5_01
0.821
0.902
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23959967_peptide
Myb
8
54
GGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWL
23959967_peptide
Myb
60
104
KTEWSREEDEKLLHLAKLMPTQWRTIAPIVGRTAAQCLERYEQLL
Links
Other
Myb/SANT
family TFs
Other
Saccoglossus kowalevskii
TFs
576 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy