CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_009_00496
(
Aquilegia coerulea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Aquca_009_00496
T285531_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.800
0.903
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.662
0.624
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.662
0.624
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.662
0.613
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.662
0.613
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_009_00496.1
Myb
37
84
RGPWTPEEDEVLSDYIRREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL
Aquca_009_00496.1
Myb
90
135
RGQIAPDEEDLILRLHRLLGNRWALIAGRIPGRTDNDIKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Aquilegia coerulea
TFs
296 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy