CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.22252s0130
(
Boechera stricta
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Bostr.22252s0130
T285759_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB3R5
M07116_2.00
Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN
Dap-seq
OMalley et al.(2016)
MYB3R5_col_a
0.768
0.893
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.691
0.786
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN
NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.664
0.779
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.664
0.736
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.664
0.736
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.22252s0130.1.p
Myb
82
128
KGGWTLEEDETLRRAVGTFKGKSWKKIAEFFHDRTEVQCLHRWQKVL
Bostr.22252s0130.1.p
Myb
134
180
KGPWTQEEDEKIVELVEKYGPAKWSVIAESLPGRIGKQCRERWHNHL
Bostr.22252s0130.1.p
Myb
186
231
KDAWTSEEEVALMNAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSL
Bostr.22252s0130.2.p
Myb
79
125
KGGWTLEEDETLRRAVGTFKGKSWKKIAEFFHDRTEVQCLHRWQKVL
Bostr.22252s0130.2.p
Myb
131
177
KGPWTQEEDEKIVELVEKYGPAKWSVIAESLPGRIGKQCRERWHNHL
Bostr.22252s0130.2.p
Myb
183
228
KDAWTSEEEVALMNAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSL
Links
Other
Myb/SANT
family TFs
Other
Boechera stricta
TFs
130 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy