Bostr.23794s0264 (Boechera stricta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Bostr.23794s0264 T285766_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G38090
M07055_2.00
Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN

NVNRDWNWRGATAARNWTVDD
Dap-seq
OMalley et al.(2016)
At2g38090_col_a
0.892 0.968
PK27693.1
M01285_2.00
Cannabis sativa
NNYTATCBNN

NNVGATARNN
PBM
Lambert et al.(2019)
pTH11302
0.785 0.883
PK27213.1
M01284_2.00
Cannabis sativa
NHWATCNNNN

NNNNGATWDN
PBM
Lambert et al.(2019)
pTH10196
0.736 0.819
PK27213.1
M02356_2.00
Cannabis sativa
NHHATCNNNN

NNNNGATDDN
PBM
Weirauch et al.(2014)
pTH9600
0.736 0.819
AT5G58900
M07146_2.00
Arabidopsis thaliana
HHWWYCTTATCYWHW

WDWRGATAAGRWWDD
Dap-seq
OMalley et al.(2016)
At5g58900_col_a
0.661 0.809
AT5G58900
M07147_2.00
Arabidopsis thaliana
HWYMTTATCHWNWWH

DWWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a
0.661 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.23794s0264.1.p Myb 140 187

Links

Other Myb/SANT family TFs
Other Boechera stricta TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29908.m006268 Ricinus communis 29908.m006268 N 0.000
AMTR_s00016p00255950 Amborella trichopoda AMTR_s00016p00255950 N 0.000
Aquca_007_00504 Aquilegia coerulea Aquca_007_00504 N 0.000
AT1G09710 Arabidopsis thaliana AT1G09710 N 0.000
Bostr.25494s0029 Boechera stricta Bostr.25494s0029 N 0.000
Cagra.4395s0155 Capsella grandiflora Cagra.4395s0155 N 0.000
Carubv10010985m.g Capsella rubella Carubv10010985m.g N 0.000
cassava31065.valid.m1 Manihot esculenta cassava31065.valid.m1 N 0.000
cassava4465.m1 Manihot esculenta cassava4465.m1 N 0.000
Ciclev10000622m.g Citrus clementina Ciclev10000622m.g N 0.000
Cla022491 Citrullus lanatus Cla022491 N 0.000
Cla023409 Citrullus lanatus Cla023409 N 0.000
Cucsa.160570 Cucumis sativus Cucsa.160570 N 0.000
Cucsa.311930 Cucumis sativus Cucsa.311930 N 0.000
Cucsa.311940 Cucumis sativus Cucsa.311940 N 0.000
Cucsa.311950 Cucumis sativus Cucsa.311950 N 0.000
Cucsa.311960 Cucumis sativus Cucsa.311960 N 0.000
Cucsa.311970 Cucumis sativus Cucsa.311970 N 0.000
Eucgr.F02154 Eucalyptus grandis Eucgr.F02154 N 0.000
evm.TU.supercontig_21.26 Carica papaya evm.TU.supercontig_21.26 N 0.000
fgenesh2_kg.1__1026__AT1G09710.1 Arabidopsis lyrata fgenesh2_kg.1__1026__AT1G09710.1 N 0.000
GSMUA_Achr6G12970_001 Musa acuminata GSMUA_Achr6G12970_001 N 0.000
Lus10028172.g Linum usitatissimum Lus10028172.g N 0.000
Lus10042871.g Linum usitatissimum Lus10042871.g N 0.000
MDP0000311848 Malus domestica MDP0000311848 N 0.000
orange1.1g007452m.g Citrus sinensis orange1.1g007452m.g N 0.000
PGSC0003DMG400009342 Solanum tuberosum PGSC0003DMG400009342 N 0.000
PK00855.1 Cannabis sativa PK00855.1 N 0.000
Pm004407 Prunus mume Pm004407 N 0.000
POPTR_0002s10670 Populus trichocarpa POPTR_0002s10670 N 0.000
PRUPE_ppa1027142mg Prunus persica PRUPE_ppa1027142mg N 0.000
SapurV1A.0004s1050 Salix purpurea SapurV1A.0004s1050 N 0.000
SapurV1A.0320s0130 Salix purpurea SapurV1A.0320s0130 N 0.000
Solyc12g087970.1 Solanum lycopersicum Solyc12g087970.1 N 0.000
VIT_18s0001g07620 Vitis vinifera VIT_18s0001g07620 N 0.000