CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.2902s0170
(
Boechera stricta
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Bostr.2902s0170
T285838_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB40
M07126_2.00
Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB40_col_a
0.909
1.000
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.663
0.739
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.2902s0170.1.p
Myb
14
61
RGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLLRCGKSCRLRWINYL
Bostr.2902s0170.1.p
Myb
67
111
RGGFTDAEEDRIMELHSQLGNRWSKIASHFSGRTDNEIKNHWNTK
Links
Other
Myb/SANT
family TFs
Other
Boechera stricta
TFs
54 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy