Bostr.7305s0060 (Boechera stricta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Bostr.7305s0060 T285906_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RVE6
M01081_2.00
Arabidopsis thaliana
AATATCTD

HAGATATT
PBM
Sullivan et al.(2014)
pTH7151
0.909 1.000
RVE6
M07138_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At5g52660_col_a
0.909 1.000
RVE6
M07139_2.00
Arabidopsis thaliana
NNNWAAATATCT

AGATATTTWNNN
Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a
0.909 1.000
PK02532.1
M02347_2.00
Cannabis sativa
WAATATCTN

NAGATATTW
PBM
Weirauch et al.(2014)
pTH9579
0.899 0.978
RVE8
M01074_2.00
Arabidopsis thaliana
NNNRWATCNN

NNGATWYNNN
PBM
Sullivan et al.(2014)
pTH7136
0.891 0.935
RVE8
M07069_2.00
Arabidopsis thaliana
NHNWAAATATCT

AGATATTTWNDN
Dap-seq
OMalley et al.(2016)
At3g09600_col_a
0.891 0.935
RVE8
M07070_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a
0.891 0.935
RVE4
M07117_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LCL1_colamp_a
0.891 0.935
RVE4
M07118_2.00
Arabidopsis thaliana
NAAAATATCT

AGATATTTTN
Dap-seq
OMalley et al.(2016)
LCL1_col
0.891 0.935
mybG
M02319_2.00
Dictyostelium discoideum
WAATATCT

AGATATTW
PBM
Weirauch et al.(2014)
pTH5362
0.808 0.848
RVE5
M01079_2.00
Arabidopsis thaliana
NWAATATCHN

NDGATATTWN
PBM
Sullivan et al.(2014)
pTH7138
0.793 0.870
RVE5
M07100_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At4g01280_col_a
0.793 0.870
RVE5
M07101_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a
0.793 0.870
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN

NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.697 0.674
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT

AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.661 0.630
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN

NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.661 0.630
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW

WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.661 0.630
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.7305s0060.1.p Myb 73 118

Links

Other Myb/SANT family TFs
Other Boechera stricta TFs

322 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA024366 Oryza indica BGIOSGA024366 N 0.000
BRADI3G33680 Brachypodium distachyon BRADI3G33680 N 0.000
LPERR05G09480 Leersia perrieri LPERR05G09480 N 0.000
LPERR05G09540 Leersia perrieri LPERR05G09540 N 0.000
OBART07G13150 Oryza barthii OBART07G13150 N 0.000
OGLUM01G06950 Oryza glumaepatula OGLUM01G06950 N 0.000
OLONG_014666 Oryza longistaminata OLONG_014666 N 0.000
OMERI07G10400 Oryza meridionalis OMERI07G10400 N 0.000
ONIVA07G11010 Oryza nivara ONIVA07G11010 N 0.000
ONIVA07G11020 Oryza nivara ONIVA07G11020 N 0.000
OPUNC07G11760 Oryza punctata OPUNC07G11760 N 0.000
ORUFI07G13350 Oryza rufipogon ORUFI07G13350 N 0.000
OS07G0456900 Oryza sativa OS07G0456900 N 0.000