CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0003s0013
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.0003s0013
T285927_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN
NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.802
0.849
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.742
0.796
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN
NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.676
0.710
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0003s0013.1.p
Myb
54
100
KGPWSTEEDAVLTKLVSKLGARNWSLIARGIPGRSGKSCRLRWCNQL
Cagra.0003s0013.1.p
Myb
106
151
RKPFSDEEDRMIISAHAIHGNKWAVIAKMLSGRTDNAIKNHWNSTL
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
186 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10017397m.g
Capsella rubella
Carubv10017397m.g
I
0.909
MYB109
Arabidopsis lyrata
fgenesh2_kg.5__1999__AT3G55730.1
I
0.859
Bostr.20505s0177
Boechera stricta
Bostr.20505s0177
I
0.845
Thhalv10010431m.g
Eutrema salsugineum
Thhalv10010431m.g
I
0.845
Bo8g090160
Brassica oleracea
Bo8g090160
I
0.836
TCM_042629
Theobroma cacao
TCM_042629
I
0.836
Gorai.011G278500
Gossypium raimondii
Gorai.011G278500
I
0.836
Bra007186
Brassica rapa
Bra007186
I
0.827
cassava1242.valid.m1
Manihot esculenta
cassava1242.valid.m1
I
0.826
e_gw1.72.10.1
Physcomitrella patens
e_gw1.72.10.1
I
0.811
e_gw1.53.214.1
Physcomitrella patens
e_gw1.53.214.1
I
0.811
AMTR_s00029p00183640
Amborella trichopoda
AMTR_s00029p00183640
I
0.811
GLYMA01G26650
Glycine max
GLYMA01G26650
I
0.809
GSMUA_Achr6G33470_001
Musa acuminata
GSMUA_Achr6G33470_001
I
0.807
MYB109
Arabidopsis thaliana
AT3G55730
I
0.806
PK07741.1
Cannabis sativa
PK07741.1
D
0.802
TRAES3BF039800050CFD_g
Triticum aestivum
TRAES3BF039800050CFD_g
I
0.800
evm.TU.supercontig_19.238
Carica papaya
evm.TU.supercontig_19.238
I
0.796
PK12959.1
Cannabis sativa
PK12959.1
I
0.795
Pm018862
Prunus mume
Pm018862
I
0.792
Si001686m.g
Setaria italica
Si001686m.g
I
0.792
GLYMA03G15810
Glycine max
GLYMA03G15810
I
0.791
Eucgr.J00250
Eucalyptus grandis
Eucgr.J00250
I
0.789
MDP0000478512
Malus domestica
MDP0000478512
I
0.789
mgf018580m
Mimulus guttatus
mgf018580m
I
0.786
VIT_08s0007g01540
Vitis vinifera
VIT_08s0007g01540
I
0.784
SapurV1A.0262s0270
Salix purpurea
SapurV1A.0262s0270
I
0.782
Gorai.006G179700
Gossypium raimondii
Gorai.006G179700
I
0.782
GSMUA_Achr5G28780_001
Musa acuminata
GSMUA_Achr5G28780_001
I
0.781
Lus10040239.g
Linum usitatissimum
Lus10040239.g
I
0.778
Lus10028250.g
Linum usitatissimum
Lus10028250.g
I
0.778
MDP0000284922
Malus domestica
MDP0000284922
I
0.778
MLOC_10322
Hordeum vulgare
MLOC_10322
I
0.776
Solyc05g052850.2
Solanum lycopersicum
Solyc05g052850.2
I
0.776
Thhalv10021963m.g
Eutrema salsugineum
Thhalv10021963m.g
I
0.776
PGSC0003DMG400020338
Solanum tuberosum
PGSC0003DMG400020338
I
0.774
Solyc09g011780.2
Solanum lycopersicum
Solyc09g011780.2
I
0.774
Pm002576
Prunus mume
Pm002576
I
0.773
MDP0000203733
Malus domestica
MDP0000203733
I
0.773
MDP0000319124
Malus domestica
MDP0000319124
I
0.773
GSMUA_Achr9G03720_001
Musa acuminata
GSMUA_Achr9G03720_001
I
0.773
GRMZM2G169316
Zea mays
GRMZM2G169316
I
0.768
Pavir.J13677
Panicum virgatum
Pavir.J13677
I
0.768
Pavir.Ea03398
Panicum virgatum
Pavir.Ea03398
I
0.768
mgf015566m
Mimulus guttatus
mgf015566m
I
0.767
SapurV1A.0709s0060
Salix purpurea
SapurV1A.0709s0060
I
0.765
PRUPE_ppa006851mg
Prunus persica
PRUPE_ppa006851mg
I
0.764
TCM_021796
Theobroma cacao
TCM_021796
I
0.764
Ciclev10012003m.g
Citrus clementina
Ciclev10012003m.g
I
0.762
orange1.1g017566m.g
Citrus sinensis
orange1.1g017566m.g
I
0.762
Sb03g039950
Sorghum bicolor
Sb03g039950
I
0.759
Aquca_009_00809
Aquilegia coerulea
Aquca_009_00809
I
0.758
gene18756-v1.0-hybrid
Fragaria vesca
gene18756-v1.0-hybrid
I
0.757
chr2.LjT13M01.180.nd
Lotus japonicus
chr2.LjT13M01.180.nd
I
0.757
orange1.1g012494m.g
Citrus sinensis
orange1.1g012494m.g
I
0.756
Ciclev10031463m.g
Citrus clementina
Ciclev10031463m.g
I
0.756
MDP0000807341
Malus domestica
MDP0000807341
I
0.755
Cla018417
Citrullus lanatus
Cla018417
I
0.754
Cucsa.066910
Cucumis sativus
Cucsa.066910
I
0.754
27798.m000612
Ricinus communis
27798.m000612
I
0.754
MTR_4g019370
Medicago truncatula
MTR_4g019370
I
0.754
Bo3g062160
Brassica oleracea
Bo3g062160
I
0.751
Cagra.2515s0014
Capsella grandiflora
Cagra.2515s0014
I
0.746
Carubv10013882m.g
Capsella rubella
Carubv10013882m.g
I
0.746
AtMYB1
Arabidopsis lyrata
scaffold_301043.1
I
0.746
Bra005006
Brassica rapa
Bra005006
I
0.746
Eucgr.K03010
Eucalyptus grandis
Eucgr.K03010
I
0.743
GLYMA14G06870
Glycine max
GLYMA14G06870
I
0.743
MYB1
Arabidopsis thaliana
AT3G09230
D
0.742
PGSC0003DMG400027190
Solanum tuberosum
PGSC0003DMG400027190
I
0.742
Bo4g025810
Brassica oleracea
Bo4g025810
I
0.741
GLYMA14G06320
Glycine max
GLYMA14G06320
I
0.735
OMERI01G34370
Oryza meridionalis
OMERI01G34370
I
0.734
Bostr.23794s0078
Boechera stricta
Bostr.23794s0078
I
0.734
OBART01G37390
Oryza barthii
OBART01G37390
I
0.731
BGIOSGA000485
Oryza indica
BGIOSGA000485
I
0.731
ORGLA01G0312200
Oryza glaberrima
ORGLA01G0312200
I
0.731
OGLUM01G41330
Oryza glumaepatula
OGLUM01G41330
I
0.731
ORUFI01G40770
Oryza rufipogon
ORUFI01G40770
I
0.731
OLONG_001357
Oryza longistaminata
OLONG_001357
I
0.731
OPUNC01G36300
Oryza punctata
OPUNC01G36300
I
0.731
gw1.10.6.1
Physcomitrella patens
gw1.10.6.1
I
0.731
OS01G0850400
Oryza sativa
OS01G0850400
I
0.731
ONIVA01G42300
Oryza nivara
ONIVA01G42300
I
0.731
Bostr.22252s0145
Boechera stricta
Bostr.22252s0145
I
0.731
Thhalv10016794m.g
Eutrema salsugineum
Thhalv10016794m.g
I
0.728
Cagra.10445s0001
Capsella grandiflora
Cagra.10445s0001
I
0.724
Carubv10023414m.g
Capsella rubella
Carubv10023414m.g
I
0.724
GLYMA02G42030
Glycine max
GLYMA02G42030
I
0.717
GLYMA02G43280
Glycine max
GLYMA02G43280
I
0.715
POPTR_0007s10490
Populus trichocarpa
POPTR_0007s10490
I
0.713
SELMODRAFT_103999
Selaginella moellendorffii
SELMODRAFT_103999
I
0.712
SELMODRAFT_99462
Selaginella moellendorffii
SELMODRAFT_99462
I
0.712
MYB25
Arabidopsis lyrata
Al_scaffold_0004_2572
I
0.710
LPERR01G32110
Leersia perrieri
LPERR01G32110
I
0.710
Bra001323
Brassica rapa
Bra001323
I
0.706
VIT_03s0180g00210
Vitis vinifera
VIT_03s0180g00210
I
0.705
evm.TU.supercontig_56.79
Carica papaya
evm.TU.supercontig_56.79
I
0.705
SELMODRAFT_113522
Selaginella moellendorffii
SELMODRAFT_113522
I
0.705
SELMODRAFT_77255
Selaginella moellendorffii
SELMODRAFT_77255
I
0.705
Pavir.Ba03084
Panicum virgatum
Pavir.Ba03084
I
0.704
Si032789m.g
Setaria italica
Si032789m.g
I
0.704
GRMZM2G050550
Zea mays
GRMZM2G050550
I
0.704
Sb02g013010
Sorghum bicolor
Sb02g013010
I
0.704
gene20888-v1.0-hybrid
Fragaria vesca
gene20888-v1.0-hybrid
I
0.702
OB01G46120
Oryza brachyantha
OB01G46120
I
0.701
LPERR09G00910
Leersia perrieri
LPERR09G00910
I
0.700
Traes_5BL_486D0D865
Triticum aestivum
Traes_5BL_486D0D865
I
0.700
MLOC_64817
Hordeum vulgare
MLOC_64817
I
0.700
Traes_5DL_92CBBE968
Triticum aestivum
Traes_5DL_92CBBE968
I
0.700
GRMZM2G087955
Zea mays
GRMZM2G087955
I
0.699
TRIUR3_08319
Triticum urartu
TRIUR3_08319
I
0.699
Eucgr.E02958
Eucalyptus grandis
Eucgr.E02958
I
0.696
cassava7558.valid.m1
Manihot esculenta
cassava7558.valid.m1
I
0.694
Cucsa.244650
Cucumis sativus
Cucsa.244650
I
0.690
Bra034057
Brassica rapa
Bra034057
I
0.687
VIT_13s0019g03200
Vitis vinifera
VIT_13s0019g03200
I
0.685
AMTR_s00007p00169630
Amborella trichopoda
AMTR_s00007p00169630
I
0.683
PK16550.1
Cannabis sativa
PK16550.1
I
0.683
cassava8939.m1
Manihot esculenta
cassava8939.m1
I
0.683
OPUNC12G06260
Oryza punctata
OPUNC12G06260
I
0.680
OMERI08G05160
Oryza meridionalis
OMERI08G05160
I
0.680
ONIVA09G00250
Oryza nivara
ONIVA09G00250
I
0.680
OGLUM09G00340
Oryza glumaepatula
OGLUM09G00340
I
0.680
BRADI4G08220
Brachypodium distachyon
BRADI4G08220
I
0.680
BGIOSGA030245
Oryza indica
BGIOSGA030245
I
0.680
ORGLA09G0002900
Oryza glaberrima
ORGLA09G0002900
I
0.680
OB09G10200
Oryza brachyantha
OB09G10200
I
0.680
OBART09G00310
Oryza barthii
OBART09G00310
I
0.680
ORUFI09G00360
Oryza rufipogon
ORUFI09G00360
I
0.680
OS09G0106700
Oryza sativa
OS09G0106700
I
0.680
mgf025567m
Mimulus guttatus
mgf025567m
I
0.679
Ciclev10026107m.g
Citrus clementina
Ciclev10026107m.g
I
0.678
orange1.1g021071m.g
Citrus sinensis
orange1.1g021071m.g
I
0.678
Aquca_007_00776
Aquilegia coerulea
Aquca_007_00776
I
0.678
e_gw1.9.342.1
Physcomitrella patens
e_gw1.9.342.1
I
0.678
MYB25
Arabidopsis thaliana
AT2G39880
I
0.678
GRMZM2G145444
Zea mays
GRMZM2G145444
I
0.676
LPERR02G05810
Leersia perrieri
LPERR02G05810
I
0.676
BRADI3G06470
Brachypodium distachyon
BRADI3G06470
I
0.676
Bo1g144680
Brassica oleracea
Bo1g144680
I
0.676
Pavir.J23512
Panicum virgatum
Pavir.J23512
I
0.676
MLOC_7426
Hordeum vulgare
MLOC_7426
I
0.676
Pavir.Ab00649
Panicum virgatum
Pavir.Ab00649
I
0.676
Si017917m.g
Setaria italica
Si017917m.g
I
0.676
Sb04g005940
Sorghum bicolor
Sb04g005940
I
0.676
ONIVA02G08210
Oryza nivara
ONIVA02G08210
I
0.676
OMERI02G07700
Oryza meridionalis
OMERI02G07700
I
0.676
OS02G0187700
Oryza sativa
OS02G0187700
D
0.676
OGLUM02G06640
Oryza glumaepatula
OGLUM02G06640
I
0.676
OPUNC02G05820
Oryza punctata
OPUNC02G05820
I
0.676
ORUFI02G06760
Oryza rufipogon
ORUFI02G06760
I
0.676
ORGLA02G0061500
Oryza glaberrima
ORGLA02G0061500
I
0.676
Gorai.012G149000
Gossypium raimondii
Gorai.012G149000
I
0.674
Gorai.010G016800
Gossypium raimondii
Gorai.010G016800
I
0.674
SapurV1A.0525s0230
Salix purpurea
SapurV1A.0525s0230
I
0.674
chr2.CM0250.240.nd
Lotus japonicus
chr2.CM0250.240.nd
I
0.673
F775_09670
Aegilops tauschii
F775_09670
I
0.673
MTR_5g016510
Medicago truncatula
MTR_5g016510
I
0.673
gene24027-v1.0-hybrid
Fragaria vesca
gene24027-v1.0-hybrid
I
0.673
29801.m003096
Ricinus communis
29801.m003096
I
0.673
GSMUA_Achr4G09450_001
Musa acuminata
GSMUA_Achr4G09450_001
I
0.672
MTR_6g015455
Medicago truncatula
MTR_6g015455
I
0.671
Bo7g118450
Brassica oleracea
Bo7g118450
I
0.671
Ca_02182
Cicer arietinum
Ca_02182
I
0.670
VIT_07s0129g01050
Vitis vinifera
VIT_07s0129g01050
I
0.670
Cla014191
Citrullus lanatus
Cla014191
I
0.670
AMTR_s00006p00225600
Amborella trichopoda
AMTR_s00006p00225600
I
0.670
Eucgr.H02226
Eucalyptus grandis
Eucgr.H02226
I
0.670
mgf002573m
Mimulus guttatus
mgf002573m
I
0.669
orange1.1g040502m.g
Citrus sinensis
orange1.1g040502m.g
I
0.668
POPTR_0008s07100
Populus trichocarpa
POPTR_0008s07100
I
0.668
Bra010593
Brassica rapa
Bra010593
I
0.668
Ciclev10029124m.g
Citrus clementina
Ciclev10029124m.g
I
0.668
PK29071.1
Cannabis sativa
PK29071.1
I
0.667
GSMUA_AchrUn_randomG01280_001
Musa acuminata
GSMUA_AchrUn_randomG01280_001
I
0.667
Aquca_007_00580
Aquilegia coerulea
Aquca_007_00580
I
0.667
SapurV1A.0597s0060
Salix purpurea
SapurV1A.0597s0060
I
0.666
Ca_12468
Cicer arietinum
Ca_12468
I
0.666
Bo3g153550
Brassica oleracea
Bo3g153550
I
0.665
MTR_5g082910
Medicago truncatula
MTR_5g082910
I
0.663
Cucsa.073130
Cucumis sativus
Cucsa.073130
I
0.662
Cla006872
Citrullus lanatus
Cla006872
I
0.662
GSMUA_Achr1G09750_001
Musa acuminata
GSMUA_Achr1G09750_001
I
0.662
Solyc04g078420.1
Solanum lycopersicum
Solyc04g078420.1
I
0.661
PGSC0003DMG400003316
Solanum tuberosum
PGSC0003DMG400003316
I
0.661