CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0534s0022
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.0534s0022
T285968_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.838
0.945
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.838
0.945
MYB88
M11038_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.838
0.945
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.773
0.890
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0534s0022.1.p
Myb
34
79
VTWTPEEDDILRKHISVHGTENWAIIASKFTDKSTRQCRRRWYTYL
Cagra.0534s0022.1.p
Myb
85
129
RGGWSPEEDTLLCEAQRLFGNRWTEIAKVVSGRTDNAVKNRFTTL
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
56 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10017119m.g
Capsella rubella
Carubv10017119m.g
I
0.909
Bostr.0556s0099
Boechera stricta
Bostr.0556s0099
I
0.888
Thhalv10004109m.g
Eutrema salsugineum
Thhalv10004109m.g
I
0.841
MYB88
Arabidopsis lyrata
fgenesh2_kg.5__181__AT2G02820.2
I
0.838
MYB88
Arabidopsis thaliana
AT2G02820
D
0.838
Bo2g136560
Brassica oleracea
Bo2g136560
I
0.833
Bra024804
Brassica rapa
Bra024804
I
0.794
Bo5g019500
Brassica oleracea
Bo5g019500
I
0.790
Thhalv10007659m.g
Eutrema salsugineum
Thhalv10007659m.g
I
0.790
Bra019658
Brassica rapa
Bra019658
I
0.790
GLYMA02G02310
Glycine max
GLYMA02G02310
I
0.789
GLYMA01G05190
Glycine max
GLYMA01G05190
I
0.789
PRUPE_ppa017536mg
Prunus persica
PRUPE_ppa017536mg
I
0.781
Pm006532
Prunus mume
Pm006532
I
0.781
MYB124
Arabidopsis thaliana
AT1G14350
D
0.773
mgf009409m
Mimulus guttatus
mgf009409m
I
0.773
29736.m002013
Ricinus communis
29736.m002013
I
0.770
Eucgr.B03417
Eucalyptus grandis
Eucgr.B03417
I
0.763
Bo7g080730
Brassica oleracea
Bo7g080730
I
0.763
cassava39089.m1
Manihot esculenta
cassava39089.m1
I
0.759
cassava35260.valid.m1
Manihot esculenta
cassava35260.valid.m1
I
0.759
TCM_011776
Theobroma cacao
TCM_011776
I
0.759
Ca_18779
Cicer arietinum
Ca_18779
I
0.759
MTR_5g038910
Medicago truncatula
MTR_5g038910
I
0.759
MDP0000165523
Malus domestica
MDP0000165523
I
0.759
SapurV1A.0062s0030
Salix purpurea
SapurV1A.0062s0030
I
0.759
SapurV1A.0200s0020
Salix purpurea
SapurV1A.0200s0020
I
0.759
PK05123.1
Cannabis sativa
PK05123.1
I
0.759
POPTR_0010s10310
Populus trichocarpa
POPTR_0010s10310
I
0.759
POPTR_0008s14790
Populus trichocarpa
POPTR_0008s14790
I
0.759
Bostr.13671s0016
Boechera stricta
Bostr.13671s0016
I
0.757
Carubv10011707m.g
Capsella rubella
Carubv10011707m.g
I
0.757
Cagra.3501s0066
Capsella grandiflora
Cagra.3501s0066
I
0.757
Gorai.013G083300
Gossypium raimondii
Gorai.013G083300
I
0.755
Cla010333
Citrullus lanatus
Cla010333
I
0.755
Cucsa.285270
Cucumis sativus
Cucsa.285270
I
0.755
orange1.1g044977m.g
Citrus sinensis
orange1.1g044977m.g
I
0.752
Ciclev10031405m.g
Citrus clementina
Ciclev10031405m.g
I
0.752
evm.TU.supercontig_183.27
Carica papaya
evm.TU.supercontig_183.27
I
0.751
Gorai.005G139500
Gossypium raimondii
Gorai.005G139500
I
0.751
MTR_8g468380
Medicago truncatula
MTR_8g468380
I
0.748
FLP
Arabidopsis lyrata
fgenesh2_kg.1__1561__AT1G14350.1
I
0.748
Lus10012847.g
Linum usitatissimum
Lus10012847.g
I
0.743
Lus10030494.g
Linum usitatissimum
Lus10030494.g
I
0.743
MDP0000210970
Malus domestica
MDP0000210970
I
0.743
GLYMA18G16040
Glycine max
GLYMA18G16040
I
0.742
GLYMA08G40950
Glycine max
GLYMA08G40950
I
0.742
VIT_01s0026g01910
Vitis vinifera
VIT_01s0026g01910
I
0.734
PGSC0003DMG400025612
Solanum tuberosum
PGSC0003DMG400025612
I
0.729
Solyc05g007160.2
Solanum lycopersicum
Solyc05g007160.2
I
0.729
Eucgr.G02522
Eucalyptus grandis
Eucgr.G02522
I
0.717
Aquca_002_00543
Aquilegia coerulea
Aquca_002_00543
I
0.704
GSMUA_Achr10G18880_001
Musa acuminata
GSMUA_Achr10G18880_001
I
0.688
Traes_2AS_1161E1D2E
Triticum aestivum
Traes_2AS_1161E1D2E
I
0.677
AMTR_s00010p00252990
Amborella trichopoda
AMTR_s00010p00252990
I
0.668
GSMUA_Achr6G10650_001
Musa acuminata
GSMUA_Achr6G10650_001
I
0.668