CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0534s0022
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.0534s0022
T285968_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.838
0.945
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.838
0.945
MYB88
M11038_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.838
0.945
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.773
0.890
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0534s0022.1.p
Myb
34
79
VTWTPEEDDILRKHISVHGTENWAIIASKFTDKSTRQCRRRWYTYL
Cagra.0534s0022.1.p
Myb
85
129
RGGWSPEEDTLLCEAQRLFGNRWTEIAKVVSGRTDNAVKNRFTTL
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
56 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy