Cagra.0549s0004 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0549s0004 T285971_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G14600
M01268_2.00
Arabidopsis thaliana
NWAYATTCYN

NRGAATRTWN
PBM
Lambert et al.(2019)
pTH11557
0.782 0.872
PK26523.1
M01283_2.00
Cannabis sativa
NWHATTCYNN

NNRGAATDWN
PBM
Lambert et al.(2019)
pTH11304
0.722 0.830
PK05732.1
M01276_2.00
Cannabis sativa
HNATTCBNN

NNVGAATND
PBM
Lambert et al.(2019)
pTH11367
0.716 0.723
AT2G40260
M07057_2.00
Arabidopsis thaliana
HHWDWAHATTCYHTN

NADRGAATDTWHWDD
Dap-seq
OMalley et al.(2016)
AT2G40260_col_a
0.701 0.766
AT2G40260
M07058_2.00
Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT

ADRGAATDTWHHNDDWHHNN
Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a
0.701 0.766
AT2G38300
M07056_2.00
Arabidopsis thaliana
WAHATTCYHTH

DADRGAATDTW
Dap-seq
OMalley et al.(2016)
AT2G38300_col_a
0.681 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0549s0004.1.p Myb 43 94
Cagra.0549s0004.2.p Myb 43 94

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACRE_085340 Acremonium chrysogenum ACRE_085340 N 0.000
CGGC5_10190 Colletotrichum gloeosporioides CGGC5_10190 N 0.000
CH063_09002 Colletotrichum higginsianum CH063_09002 N 0.000
estExt_fgenesh1_kg.C_20040 Cryphonectria parasitica estExt_fgenesh1_kg.C_20040 N 0.000
GLRG_08195 Colletotrichum graminicola GLRG_08195 N 0.000