Cagra.1232s0025 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1232s0025 T286022_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.909 1.000
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.862 0.925
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.862 0.925
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.853 0.925
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.785 0.860
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.785 0.860
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.785 0.860
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.742 0.828
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.742 0.828
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.742 0.828
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.742 0.828
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.742 0.828
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.675 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1232s0025.1.p Myb 14 60
Cagra.1232s0025.1.p Myb 66 111

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

287 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007225 Calypte anna Aan_R007225 I 0.000
Afo_R011673 Aptenodytes forsteri Afo_R011673 I 0.000
Alligator_sinensis_CCG002397.1 Alligator sinensis Alligator_sinensis_CCG002397.1 I 0.000
Alligator_sinensis_CCG004214.1 Alligator sinensis Alligator_sinensis_CCG004214.1 I 0.000
Brh_R009446 Buceros rhinoceros Brh_R009446 I 0.000
MITF Anolis carolinensis ENSACAG00000013586 I 0.000
TFE3 Anolis carolinensis ENSACAG00000022140 I 0.000
ENSAMEG00000012353 Ailuropoda melanoleuca ENSAMEG00000012353 I 0.000
ENSAMEG00000017117 Ailuropoda melanoleuca ENSAMEG00000017117 I 0.000
ENSAMXG00000020781 Astyanax mexicanus ENSAMXG00000020781 I 0.000
ENSAPLG00000011965 Anas platyrhynchos ENSAPLG00000011965 I 0.000
MITF Bos taurus ENSBTAG00000006679 I 0.000
TFE3 Bos taurus ENSBTAG00000008523 I 0.000
ENSBTAP00000053693-D1 Bos grunniens ENSBTAP00000053693-D1 I 0.000
MITF Canis familiaris ENSCAFG00000006496 I 0.000
TFE3 Canis familiaris ENSCAFG00000015765 I 0.000
ENSCING00000004702 Ciona intestinalis ENSCING00000004702 I 0.000
MITF Callithrix jacchus ENSCJAG00000013260 I 0.000
TFE3 Cavia porcellus ENSCPOG00000012410 I 0.000
MITF Cavia porcellus ENSCPOG00000014963 I 0.000
ENSCSAG00000011595 Chlorocebus sabaeus ENSCSAG00000011595 I 0.000
ENSCSAG00000013021 Chlorocebus sabaeus ENSCSAG00000013021 I 0.000
ENSCSAVG00000010462 Ciona savignyi ENSCSAVG00000010462 I 0.000
mitfa Danio rerio ENSDARG00000003732 I 0.000
tfe3b Danio rerio ENSDARG00000019457 I 0.000
mitfb Danio rerio ENSDARG00000037833 I 0.000
tfe3a Danio rerio ENSDARG00000098903 I 0.000
MITF Dasypus novemcinctus ENSDNOG00000037006 I 0.000
TFE3 Dasypus novemcinctus ENSDNOG00000039173 I 0.000
Mitf Dipodomys ordii ENSDORG00000003336 I 0.000
ENSDORG00000013258 Dipodomys ordii ENSDORG00000013258 I 0.000
MITF Equus caballus ENSECAG00000005360 I 0.000
TFE3 Equus caballus ENSECAG00000020642 I 0.000
MITF Erinaceus europaeus ENSEEUG00000005163 I 0.000
ENSFALG00000013383 Ficedula albicollis ENSFALG00000013383 I 0.000
TFE3 Felis catus ENSFCAG00000002574 I 0.000
MITF Felis catus ENSFCAG00000024419 I 0.000
TFE3 Homo sapiens ENSG00000068323 D 0.000
MITF Homo sapiens ENSG00000187098 D 0.000
mitfb Gasterosteus aculeatus ENSGACG00000003425 I 0.000
tfe3b Gasterosteus aculeatus ENSGACG00000010355 I 0.000
mitfa Gasterosteus aculeatus ENSGACG00000011875 I 0.000
ENSGALG00000007679 Gallus gallus ENSGALG00000007679 I 0.000
MITF Gorilla gorilla ENSGGOG00000024338 I 0.000
ENSGMOG00000007421 Gadus morhua ENSGMOG00000007421 I 0.000
ENSGMOG00000010175 Gadus morhua ENSGMOG00000010175 I 0.000
ENSGMOG00000018115 Gadus morhua ENSGMOG00000018115 I 0.000
ENSLACG00000011547 Latimeria chalumnae ENSLACG00000011547 I 0.000
MITF Loxodonta africana ENSLAFG00000023153 I 0.000
TFE3 Loxodonta africana ENSLAFG00000025585 I 0.000
ENSLOCG00000010058 Lepisosteus oculatus ENSLOCG00000010058 I 0.000
ENSLOCG00000014691 Lepisosteus oculatus ENSLOCG00000014691 I 0.000
MITF Meleagris gallopavo ENSMGAG00000009507 I 0.000
ENSMICG00000002894 Microcebus murinus ENSMICG00000002894 I 0.000
TFE3 Microcebus murinus ENSMICG00000009708 I 0.000
MITF Myotis lucifugus ENSMLUG00000002587 I 0.000
TFE3 Myotis lucifugus ENSMLUG00000030217 I 0.000
MITF Macaca mulatta ENSMMUG00000002100 I 0.000
TFE3 Macaca mulatta ENSMMUG00000023494 I 0.000
ENSMMUP00000030934 Macaca fascicularis ENSMMUP00000030934 I 0.000
MITF Monodelphis domestica ENSMODG00000003754 I 0.000
TFE3 Monodelphis domestica ENSMODG00000009925 I 0.000
ENSMPUG00000013794 Mustela putorius furo ENSMPUG00000013794 I 0.000
ENSMPUG00000016972 Mustela putorius furo ENSMPUG00000016972 I 0.000
Tfe3 Mus musculus ENSMUSG00000000134 D 0.000
Mitf Mus musculus ENSMUSG00000035158 D 0.000
ENSNLEG00000002357 Nomascus leucogenys ENSNLEG00000002357 I 0.000
ENSNLEG00000007963 Nomascus leucogenys ENSNLEG00000007963 I 0.000
ENSOANG00000012406 Ornithorhynchus anatinus ENSOANG00000012406 I 0.000
TFE3 Ornithorhynchus anatinus ENSOANG00000013574 I 0.000
ENSOARG00000009833 Ovis aries ENSOARG00000009833 I 0.000
ENSOARG00000011157 Ovis aries ENSOARG00000011157 I 0.000
MITF Oryctolagus cuniculus ENSOCUG00000002190 I 0.000
TFE3 Oryctolagus cuniculus ENSOCUG00000015807 I 0.000
MITF Otolemur garnettii ENSOGAG00000000043 I 0.000
TFE3 Otolemur garnettii ENSOGAG00000031330 I 0.000
ENSONIG00000000820 Oreochromis niloticus ENSONIG00000000820 I 0.000
ENSONIG00000016952 Oreochromis niloticus ENSONIG00000016952 I 0.000
ENSONIG00000020270 Oreochromis niloticus ENSONIG00000020270 I 0.000
ENSONIG00000020291 Oreochromis niloticus ENSONIG00000020291 I 0.000
TFE3 Ochotona princeps ENSOPRG00000007735 I 0.000
mitfa Oryzias latipes ENSORLG00000003123 I 0.000
mitfb Oryzias latipes ENSORLG00000013461 I 0.000
tfe3b Oryzias latipes ENSORLG00000014134 I 0.000
ENSP00000338360-D1 Bos grunniens ENSP00000338360-D1 I 0.000
ENSP00000391803 Macaca fascicularis ENSP00000391803 I 0.000
ENSPANG00000011565 Papio anubis ENSPANG00000011565 I 0.000
ENSPANG00000013676 Papio anubis ENSPANG00000013676 I 0.000
TFE3 Procavia capensis ENSPCAG00000003945 I 0.000
ENSPFOG00000001499 Poecilia formosa ENSPFOG00000001499 I 0.000
ENSPFOG00000006677 Poecilia formosa ENSPFOG00000006677 I 0.000
ENSPFOG00000007171 Poecilia formosa ENSPFOG00000007171 I 0.000
ENSPMAG00000001002 Petromyzon marinus ENSPMAG00000001002 I 0.000
ENSPMAG00000004927 Petromyzon marinus ENSPMAG00000004927 I 0.000
ENSPMAG00000008619 Petromyzon marinus ENSPMAG00000008619 I 0.000
ENSPPYG00000013725 Pongo abelii ENSPPYG00000013725 I 0.000
ENSPPYG00000029376 Pongo abelii ENSPPYG00000029376 I 0.000
ENSPSIG00000012120 Pelodiscus sinensis ENSPSIG00000012120 I 0.000
MITF Pan troglodytes ENSPTRG00000015100 I 0.000
TFE3 Pteropus vampyrus ENSPVAG00000009435 I 0.000
Mitf Rattus norvegicus ENSRNOG00000008658 I 0.000
Tfe3 Rattus norvegicus ENSRNOG00000009605 I 0.000
TFE3 Sorex araneus ENSSARG00000000644 I 0.000
MITF Sorex araneus ENSSARG00000002538 I 0.000
ENSSHAG00000003327 Sarcophilus harrisii ENSSHAG00000003327 I 0.000
ENSSHAG00000017522 Sarcophilus harrisii ENSSHAG00000017522 I 0.000
TFE3 Sus scrofa ENSSSCG00000012287 I 0.000
ENSSTOG00000014237 Ictidomys tridecemlineatus ENSSTOG00000014237 I 0.000
MITF Tupaia belangeri ENSTBEG00000017713 I 0.000
MITF Taeniopygia guttata ENSTGUG00000009847 I 0.000
tfe3b Tetraodon nigroviridis ENSTNIG00000007324 I 0.000
mitfa Tetraodon nigroviridis ENSTNIG00000007360 I 0.000
mitfb Tetraodon nigroviridis ENSTNIG00000012564 I 0.000
ENSTNIG00000019469 Tetraodon nigroviridis ENSTNIG00000019469 I 0.000
mitfa Takifugu rubripes ENSTRUG00000001600 I 0.000
tfe3a Takifugu rubripes ENSTRUG00000005584 I 0.000
mitfb Takifugu rubripes ENSTRUG00000012080 I 0.000
tfe3b Takifugu rubripes ENSTRUG00000013198 I 0.000
ENSTSYG00000011324 Tarsius syrichta ENSTSYG00000011324 I 0.000
MITF Tursiops truncatus ENSTTRG00000007072 I 0.000
TFE3 Tursiops truncatus ENSTTRG00000009064 I 0.000
ENSXMAG00000002200 Xiphophorus maculatus ENSXMAG00000002200 I 0.000
ENSXMAG00000003547 Xiphophorus maculatus ENSXMAG00000003547 I 0.000
ENSXMAG00000007656 Xiphophorus maculatus ENSXMAG00000007656 I 0.000
ENSXMAG00000016472 Xiphophorus maculatus ENSXMAG00000016472 I 0.000
e_gw.492.5.1 Branchiostoma floridae e_gw.492.5.1 I 0.000
Gfo_R014572 Geospiza fortis Gfo_R014572 I 0.000
Myotis_brandtii_Mitf_10022588 Myotis brandtii Myotis_brandtii_Mitf_10022588 I 0.000
Myotis_brandtii_TFE3_10010865 Myotis brandtii Myotis_brandtii_TFE3_10010865 I 0.000
Pvit_00330 Pogona vitticeps Pvit_00330 I 0.000
Pvit_01233 Pogona vitticeps Pvit_01233 I 0.000
Tal_R001329 Tyto alba Tal_R001329 I 0.000
mitf Xenopus tropicalis XB-GENE-484962 I 0.000
tfe3.S Xenopus laevis XB-GENE-5918226 I 0.000
mitf.L Xenopus laevis XB-GENE-6252679 I 0.000
mitf.S Xenopus laevis XB-GENE-6464338 I 0.000