Cagra.1262s0035 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1262s0035 T286024_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.757 0.723
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.757 0.723
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.735 0.660
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.683 0.638
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1262s0035.1.p Myb 6 58

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10009763m.g Capsella rubella Carubv10009763m.g I 0.909
Bo3g184590 Brassica oleracea Bo3g184590 I 0.768
Bra030894 Brassica rapa Bra030894 I 0.768
Bra016037 Brassica rapa Bra016037 I 0.757
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.757
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.757
Bo6g116150 Brassica oleracea Bo6g116150 I 0.757
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.757
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.757
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.757
Bostr.7128s0053 Boechera stricta Bostr.7128s0053 I 0.745
Bra030992 Brassica rapa Bra030992 I 0.745
Bo8g104830 Brassica oleracea Bo8g104830 I 0.745
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.735
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.735
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.735
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.735
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.735
OS01G0708000 Oryza sativa OS01G0708000 D 0.735
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.735
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.735
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.735
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.735
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.735
OBART01G28260 Oryza barthii OBART01G28260 I 0.735
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.735
Bra016598 Brassica rapa Bra016598 I 0.735
Bo8g067280 Brassica oleracea Bo8g067280 I 0.735
OB01G37330 Oryza brachyantha OB01G37330 I 0.735
Bo5g023860 Brassica oleracea Bo5g023860 I 0.717
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.717
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.717
Bra025967 Brassica rapa Bra025967 I 0.717
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.708
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.705
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.705
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.696
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.696
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.696
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.696
29706.m001328 Ricinus communis 29706.m001328 I 0.696
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.696
TCM_029078 Theobroma cacao TCM_029078 I 0.696
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.696
Thhalv10011866m.g Eutrema salsugineum Thhalv10011866m.g I 0.692
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.687
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.686
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I 0.686
Pm013309 Prunus mume Pm013309 I 0.686
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.683
TRB1 Arabidopsis thaliana AT1G49950 D 0.683
Bo6g018740 Brassica oleracea Bo6g018740 I 0.683
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.683
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.683
Bra018818 Brassica rapa Bra018818 I 0.683
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.683
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.683
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.683
mgf009594m Mimulus guttatus mgf009594m I 0.678
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.677
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.677
Cla012798 Citrullus lanatus Cla012798 I 0.677
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.677
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.674
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.674
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I 0.672
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.667
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.667
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.667
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.667
Thhalv10012087m.g Eutrema salsugineum Thhalv10012087m.g I 0.663