Cagra.1533s0005 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1533s0005 T286041_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB4
M02303_2.00
Arabidopsis thaliana
YACCWACY

RGTWGGTR
PBM
Weirauch et al.(2014)
pTH7075
0.854 0.935
MYB4
M07115_2.00
Arabidopsis thaliana
NYYACCWAMHWHNDD

HHNDWDKTWGGTRRN
Dap-seq
OMalley et al.(2016)
MYB4_col200_a
0.854 0.935
MYB3
M02288_2.00
Arabidopsis thaliana
NNYACCTACCN

NGGTAGGTRNN
PBM
Weirauch et al.(2014)
pTH7125
0.807 0.892
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.665 0.710
PK06182.1
M02349_2.00
Cannabis sativa
WTACCTACCN

NGGTAGGTAW
PBM
Weirauch et al.(2014)
pTH9581
0.664 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1533s0005.1.p Myb 14 61
Cagra.1533s0005.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

Invalid Input OrderBy

565 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action