Cagra.1613s0002 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1613s0002 T286048_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G49010
M01269_2.00 		Arabidopsis thaliana
NNYWATCNN
NNGATWRNN		 PBM
Lambert et al.(2019)
pTH11535 		0.852 0.923
AT1G49010
M07022_2.00 		Arabidopsis thaliana
NHHWWYCTTATCYWH
DWRGATAAGRWWDDN		 Dap-seq
OMalley et al.(2016)
At1g49010_col_a 		0.852 0.923
AT1G49010
M07023_2.00 		Arabidopsis thaliana
WWYCTTATCYWHWHH
DDWDWRGATAAGRWW		 Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a 		0.852 0.923
PK19621.1
M01280_2.00 		Cannabis sativa
NNTTATCYN
NRGATAANN		 PBM
Lambert et al.(2019)
pTH10140 		0.678 0.802
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1613s0002.1.p Myb 134 179

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10009808m.g Capsella rubella Carubv10009808m.g I 0.909
Bostr.26675s0270 Boechera stricta Bostr.26675s0270 I 0.853
AT1G49010 Arabidopsis thaliana AT1G49010 D 0.852
scaffold_104540.1 Arabidopsis lyrata scaffold_104540.1 I 0.848
Thhalv10011650m.g Eutrema salsugineum Thhalv10011650m.g I 0.805
Bo6g018000 Brassica oleracea Bo6g018000 I 0.784
Bra018772 Brassica rapa Bra018772 I 0.776
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I 0.729
SapurV1A.0583s0020 Salix purpurea SapurV1A.0583s0020 I 0.727
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I 0.725
TCM_012262 Theobroma cacao TCM_012262 I 0.725
Bra014169 Brassica rapa Bra014169 I 0.720
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I 0.719
Bo00685s060 Brassica oleracea Bo00685s060 I 0.708
GLYMA17G13010 Glycine max GLYMA17G13010 I 0.703
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.697
POPTR_0012s05720 Populus trichocarpa POPTR_0012s05720 I 0.697
MTR_4g111975 Medicago truncatula MTR_4g111975 I 0.683
GLYMA05G07980 Glycine max GLYMA05G07980 I 0.683
30174.m008717 Ricinus communis 30174.m008717 I 0.682
Ca_06612 Cicer arietinum Ca_06612 I 0.681
PK19621.1 Cannabis sativa PK19621.1 D 0.678
chr4.LjB15O07.50.nc Lotus japonicus chr4.LjB15O07.50.nc I 0.676
gene26214-v1.0-hybrid Fragaria vesca gene26214-v1.0-hybrid I 0.667