Cagra.1613s0002 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1613s0002 T286048_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G49010
M01269_2.00 		Arabidopsis thaliana
NNYWATCNN
NNGATWRNN		 PBM
Lambert et al.(2019)
pTH11535 		0.852 0.923
AT1G49010
M07022_2.00 		Arabidopsis thaliana
NHHWWYCTTATCYWH
DWRGATAAGRWWDDN		 Dap-seq
OMalley et al.(2016)
At1g49010_col_a 		0.852 0.923
AT1G49010
M07023_2.00 		Arabidopsis thaliana
WWYCTTATCYWHWHH
DDWDWRGATAAGRWW		 Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a 		0.852 0.923
PK19621.1
M01280_2.00 		Cannabis sativa
NNTTATCYN
NRGATAANN		 PBM
Lambert et al.(2019)
pTH10140 		0.678 0.802
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1613s0002.1.p Myb 134 179

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI5G13370 Brachypodium distachyon BRADI5G13370 N 0.000
MLOC_37569 Hordeum vulgare MLOC_37569 N 0.000
OB04G23370 Oryza brachyantha OB04G23370 N 0.000
ORGLA04G0130500 Oryza glaberrima ORGLA04G0130500 N 0.000
BGIOSGA016602 Oryza indica BGIOSGA016602 N 0.000
OS04G0476500 Oryza sativa OS04G0476500 N 0.000
Pavir.Ga01387 Panicum virgatum Pavir.Ga01387 N 0.000
Pavir.Gb01461 Panicum virgatum Pavir.Gb01461 N 0.000
Si009382m.g Setaria italica Si009382m.g N 0.000
Sb06g020040 Sorghum bicolor Sb06g020040 N 0.000
Traes_2AL_05ADB552E Triticum aestivum Traes_2AL_05ADB552E N 0.000
Traes_2DL_6649188E4 Triticum aestivum Traes_2DL_6649188E4 N 0.000
TRIUR3_23344 Triticum urartu TRIUR3_23344 N 0.000