Cagra.1655s0043 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1655s0043 T286053_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G11280
M01075_2.00
Arabidopsis thaliana
NNTTATCNNN

NNNGATAANN
PBM
Sullivan et al.(2014)
pTH7245
0.878 0.968
AT3G11280
M07074_2.00
Arabidopsis thaliana
DWDWDGATAAKRWW

WWYMTTATCHWHWH
Dap-seq
OMalley et al.(2016)
At3g11280_col_a
0.878 0.968
AT3G11280
M07075_2.00
Arabidopsis thaliana
NNWNNDGATAAGRWHDNN

NNHDWYCTTATCHNNWNN
Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a
0.878 0.968
AT5G05790
M07119_2.00
Arabidopsis thaliana
HWYMTTATCHWNWHH

DDWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g05790_col_a
0.751 0.926
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1655s0043.1.p Myb 127 174
Cagra.1655s0043.2.p Myb 127 174

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.909
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.898
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.888
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.878
Bra034173 Brassica rapa Bra034173 I 0.862
Bra034853 Brassica rapa Bra034853 I 0.862
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.851
Bo1g141120 Brassica oleracea Bo1g141120 I 0.845
Bo5g136680 Brassica oleracea Bo5g136680 I 0.840
TCM_042604 Theobroma cacao TCM_042604 I 0.805
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.790
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.786
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.770
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.769
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.765
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.763
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.756
Bo9g176900 Brassica oleracea Bo9g176900 I 0.755
Bra009134 Brassica rapa Bra009134 I 0.755
AT5G05790 Arabidopsis thaliana AT5G05790 D 0.751
scaffold_600551.1 Arabidopsis lyrata scaffold_600551.1 I 0.751
Bostr.13129s0394 Boechera stricta Bostr.13129s0394 I 0.751
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.747
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.747
29610.m000410 Ricinus communis 29610.m000410 I 0.747
mgf010347m Mimulus guttatus mgf010347m I 0.745
PK15104.1 Cannabis sativa PK15104.1 I 0.741
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.741
Carubv10001695m.g Capsella rubella Carubv10001695m.g I 0.740
Cagra.5131s0007 Capsella grandiflora Cagra.5131s0007 I 0.740
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.739
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.736
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.736
Thhalv10014370m.g Eutrema salsugineum Thhalv10014370m.g I 0.735
PGSC0003DMG400020730 Solanum tuberosum PGSC0003DMG400020730 I 0.734
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I 0.730
Pm018878 Prunus mume Pm018878 I 0.727
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.727
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.725
Solyc03g096350.2 Solanum lycopersicum Solyc03g096350.2 I 0.720
Ca_12513 Cicer arietinum Ca_12513 I 0.718
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.718
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.718
MDP0000277813 Malus domestica MDP0000277813 I 0.709
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.708
gene20912-v1.0-hybrid Fragaria vesca gene20912-v1.0-hybrid I 0.704
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.699
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.699
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.698
Eucgr.G03029 Eucalyptus grandis Eucgr.G03029 I 0.694
Cla004397 Citrullus lanatus Cla004397 I 0.692
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.691
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.687
Cla013553 Citrullus lanatus Cla013553 I 0.687
MDP0000809640 Malus domestica MDP0000809640 I 0.686
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.676
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.669
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.668
TCM_041672 Theobroma cacao TCM_041672 I 0.666