Cagra.1659s0003 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1659s0003 T286055_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB94
M02298_2.00
Arabidopsis thaliana
DACCGGTH

DACCGGTH
PBM
Weirauch et al.(2014)
pTH7085
0.892 0.989
MYB94
M07094_2.00
Arabidopsis thaliana
HHNYHYCAACYACYWHHNN

NNDDWRGTRGTTGRDRNDD
Dap-seq
OMalley et al.(2016)
MYB94_col_b
0.892 0.989
MYB30
M07089_2.00
Arabidopsis thaliana
NHHHCAACYACYWHH

DDWRGTRGTTGDDDN
Dap-seq
OMalley et al.(2016)
MYB30_col_a
0.868 0.925
MYB30
M07090_2.00
Arabidopsis thaliana
HHHYYHCCAACYAMY

RKTRGTTGGDRRDDD
Dap-seq
OMalley et al.(2016)
MYB30_colamp_a
0.868 0.925
MYB96
M07153_2.00
Arabidopsis thaliana
HHHHHYHHCCAACYAHYWNHN

NDNWRDTRGTTGGDDRDDDDD
Dap-seq
OMalley et al.(2016)
MYB96_colamp_a
0.859 0.957
MYB96
M07154_2.00
Arabidopsis thaliana
YAMCHNCCAMCHAHHHHH

DDDDDTDGKTGGNDGKTR
Dap-seq
OMalley et al.(2016)
MYB96_col_b
0.859 0.957
MYB60
M07001_2.00
Arabidopsis thaliana
HNNHYYCAACYACYWHHNN

NNDDWRGTRGTTGRRDNND
Dap-seq
OMalley et al.(2016)
MYB60_col
0.852 0.914
ATY13
M07035_2.00
Arabidopsis thaliana
HAMCHMCCAMCHAHH

DDTDGKTGGKDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_col_a
0.852 0.925
ATY13
M07036_2.00
Arabidopsis thaliana
HAMCHHCCAACHAHH

DDTDGTTGGDDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_colamp_a
0.852 0.925
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1659s0003.1.p Myb 14 61
Cagra.1659s0003.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

310 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30116.m000393 Ricinus communis 30116.m000393 N 0.000
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.000
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.000
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.000
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.000
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.000
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.000
Cla002005 Citrullus lanatus Cla002005 N 0.000
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.000
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.000
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.000
F775_20121 Aegilops tauschii F775_20121 N 0.000
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.000
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.000
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.000
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.000
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.000
MDP0000597087 Malus domestica MDP0000597087 N 0.000
MDP0000634922 Malus domestica MDP0000634922 N 0.000
mgf000387m Mimulus guttatus mgf000387m N 0.000
mgf013454m Mimulus guttatus mgf013454m N 0.000
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.000
OB02G40920 Oryza brachyantha OB02G40920 N 0.000
OB07G29110 Oryza brachyantha OB07G29110 N 0.000
OBART02G34050 Oryza barthii OBART02G34050 N 0.000
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.000
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.000
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.000
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.000
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.000
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.000
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.000
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.000
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.000
OS02G0770600 Oryza sativa OS02G0770600 N 0.000
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.000
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.000
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.000
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.000
PK04394.1 Cannabis sativa PK04394.1 N 0.000
PK16821.1 Cannabis sativa PK16821.1 N 0.000
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.000
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.000
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.000
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.000
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.000
Si017699m.g Setaria italica Si017699m.g N 0.000
TCM_006422 Theobroma cacao TCM_006422 N 0.000
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.000
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.000
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.000
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.000