Cagra.2400s0001 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.2400s0001 T286090_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB113
M07026_2.00
Arabidopsis thaliana
VTAACKRAHTH

DADTYMGTTAB
Dap-seq
OMalley et al.(2016)
MYB113_col_a
0.857 0.882
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2400s0001.1.p Myb 11 58
Cagra.2400s0001.1.p Myb 64 109

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10020856m.g Capsella rubella Carubv10020856m.g I 0.909
Thhalv10019041m.g Eutrema salsugineum Thhalv10019041m.g I 0.892
MYB114 Arabidopsis thaliana AT1G66380 I 0.892
PAP1 Arabidopsis lyrata fgenesh2_kg.1__4777__AT1G56650.1 I 0.888
Bo6g099880 Brassica oleracea Bo6g099880 I 0.883
Bra039763 Brassica rapa Bra039763 I 0.881
Bra001917 Brassica rapa Bra001917 I 0.881
Bo00835s060 Brassica oleracea Bo00835s060 I 0.881
Bra004162 Brassica rapa Bra004162 I 0.880
Bo6g100940 Brassica oleracea Bo6g100940 I 0.880
ATMYB90 Arabidopsis lyrata scaffold_201358.1 I 0.876
MYB113 Arabidopsis lyrata fgenesh2_kg.2__869__AT1G66370.1 I 0.874
Bostr.26959s0279 Boechera stricta Bostr.26959s0279 I 0.873
MYB75 Arabidopsis thaliana AT1G56650 I 0.870
scaffold_201357.1 Arabidopsis lyrata scaffold_201357.1 I 0.869
Cagra.2629s0007 Capsella grandiflora Cagra.2629s0007 I 0.859
MYB90 Arabidopsis thaliana AT1G66390 I 0.859
MYB113 Arabidopsis thaliana AT1G66370 D 0.857
Solyc10g086270.1 Solanum lycopersicum Solyc10g086270.1 I 0.854
Solyc10g086290.1 Solanum lycopersicum Solyc10g086290.1 I 0.840
Solyc10g086250.1 Solanum lycopersicum Solyc10g086250.1 I 0.839
Solyc10g086260.1 Solanum lycopersicum Solyc10g086260.1 I 0.837
Cagra.0463s0008 Capsella grandiflora Cagra.0463s0008 I 0.836
Carubv10020888m.g Capsella rubella Carubv10020888m.g I 0.829
fgenesh1_pg.C_scaffold_2000950 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000950 I 0.829
Gorai.001G087200 Gossypium raimondii Gorai.001G087200 I 0.819
Gorai.001G087400 Gossypium raimondii Gorai.001G087400 I 0.819
Ciclev10013455m.g Citrus clementina Ciclev10013455m.g I 0.817
Cagra.0463s0007 Capsella grandiflora Cagra.0463s0007 I 0.814
scaffold_201356.1 Arabidopsis lyrata scaffold_201356.1 I 0.814
PK05760.1 Cannabis sativa PK05760.1 I 0.813
TCM_019192 Theobroma cacao TCM_019192 I 0.810
evm.TU.supercontig_116.38 Carica papaya evm.TU.supercontig_116.38 I 0.804
Pm029445 Prunus mume Pm029445 I 0.804
evm.TU.supercontig_2742.1 Carica papaya evm.TU.supercontig_2742.1 I 0.804
VIT_14s0006g01290 Vitis vinifera VIT_14s0006g01290 I 0.802
Cagra.0463s0006 Capsella grandiflora Cagra.0463s0006 I 0.794
VIT_02s0033g00450 Vitis vinifera VIT_02s0033g00450 I 0.791
VIT_02s0033g00410 Vitis vinifera VIT_02s0033g00410 I 0.791
VIT_02s0033g00400 Vitis vinifera VIT_02s0033g00400 I 0.789
PK17827.1 Cannabis sativa PK17827.1 I 0.788
MTR_5g079290 Medicago truncatula MTR_5g079290 I 0.782
MTR_5g078950 Medicago truncatula MTR_5g078950 I 0.776
Pm029442 Prunus mume Pm029442 I 0.776
mgf019317m Mimulus guttatus mgf019317m I 0.773
MTR_5g079220 Medicago truncatula MTR_5g079220 I 0.771
Pm029440 Prunus mume Pm029440 I 0.771
27763.m000042 Ricinus communis 27763.m000042 I 0.770
VIT_02s0033g00390 Vitis vinifera VIT_02s0033g00390 I 0.768
PRUPE_ppa026640mg Prunus persica PRUPE_ppa026640mg I 0.768
MTR_5g078910 Medicago truncatula MTR_5g078910 I 0.767
MTR_5g078800 Medicago truncatula MTR_5g078800 I 0.767
MTR_0001s0360 Medicago truncatula MTR_0001s0360 I 0.766
MTR_5g078860 Medicago truncatula MTR_5g078860 I 0.766
MTR_8g060940 Medicago truncatula MTR_8g060940 I 0.765
Lus10042522.g Linum usitatissimum Lus10042522.g I 0.763
VIT_02s0033g00430 Vitis vinifera VIT_02s0033g00430 I 0.759
30128.m008730 Ricinus communis 30128.m008730 I 0.758
chr1.CM0141.350.nd Lotus japonicus chr1.CM0141.350.nd I 0.756
TCM_026054 Theobroma cacao TCM_026054 I 0.751
Eucgr.H04157 Eucalyptus grandis Eucgr.H04157 I 0.750
VIT_14s0006g01280 Vitis vinifera VIT_14s0006g01280 I 0.749
Aquca_047_00006 Aquilegia coerulea Aquca_047_00006 I 0.748
MTR_5g079120 Medicago truncatula MTR_5g079120 I 0.747
MTR_5g078930 Medicago truncatula MTR_5g078930 I 0.746
MTR_7g017260 Medicago truncatula MTR_7g017260 I 0.745
gene31413-v1.0-hybrid Fragaria vesca gene31413-v1.0-hybrid I 0.744
Gorai.007G268800 Gossypium raimondii Gorai.007G268800 I 0.744
GLYMA09G36966 Glycine max GLYMA09G36966 I 0.744
Gorai.013G118300 Gossypium raimondii Gorai.013G118300 I 0.742
Eucgr.J01580 Eucalyptus grandis Eucgr.J01580 I 0.740
Lus10009130.g Linum usitatissimum Lus10009130.g I 0.738
Lus10028513.g Linum usitatissimum Lus10028513.g I 0.738
MDP0000192051 Malus domestica MDP0000192051 I 0.736
Ca_22078 Cicer arietinum Ca_22078 I 0.735
Eucgr.J01586 Eucalyptus grandis Eucgr.J01586 I 0.735
GLYMA18G49690 Glycine max GLYMA18G49690 I 0.731
Eucgr.J01553 Eucalyptus grandis Eucgr.J01553 I 0.730
Eucgr.J01569 Eucalyptus grandis Eucgr.J01569 I 0.730
GLYMA18G41520 Glycine max GLYMA18G41520 I 0.727
chr1.LjT44L17.240.nd Lotus japonicus chr1.LjT44L17.240.nd I 0.727
MTR_0197s0010 Medicago truncatula MTR_0197s0010 I 0.727
Lus10028514.g Linum usitatissimum Lus10028514.g I 0.727
Lus10009129.g Linum usitatissimum Lus10009129.g I 0.727
Ca_19630 Cicer arietinum Ca_19630 I 0.727
Eucgr.F02842 Eucalyptus grandis Eucgr.F02842 I 0.726
PRUPE_ppa010069mg Prunus persica PRUPE_ppa010069mg I 0.725
evm.TU.contig_42663.2 Carica papaya evm.TU.contig_42663.2 I 0.724
PRUPE_ppa016711mg Prunus persica PRUPE_ppa016711mg I 0.723
GLYMA07G16980 Glycine max GLYMA07G16980 I 0.723
Eucgr.J01578 Eucalyptus grandis Eucgr.J01578 I 0.719
Cucsa.277570 Cucumis sativus Cucsa.277570 I 0.719
Eucgr.J01573 Eucalyptus grandis Eucgr.J01573 I 0.718
Eucgr.J01555 Eucalyptus grandis Eucgr.J01555 I 0.718
Aquca_015_00088 Aquilegia coerulea Aquca_015_00088 I 0.718
Eucgr.J01576 Eucalyptus grandis Eucgr.J01576 I 0.717
MTR_0247s0040 Medicago truncatula MTR_0247s0040 I 0.715
VIT_14s0006g01340 Vitis vinifera VIT_14s0006g01340 I 0.710
mgf022565m Mimulus guttatus mgf022565m I 0.707
evm.TU.supercontig_51.67 Carica papaya evm.TU.supercontig_51.67 I 0.703
GLYMA09G37010 Glycine max GLYMA09G37010 I 0.698
POPTR_0005s14480 Populus trichocarpa POPTR_0005s14480 I 0.698
Eucgr.J01574 Eucalyptus grandis Eucgr.J01574 I 0.697
GLYMA19G02980 Glycine max GLYMA19G02980 I 0.696
Pm025429 Prunus mume Pm025429 I 0.695
Pm031337 Prunus mume Pm031337 I 0.695
PRUPE_ppa020385mg Prunus persica PRUPE_ppa020385mg I 0.695
MDP0000478453 Malus domestica MDP0000478453 I 0.694
PDK_20s1447601g001 Phoenix dactylifera PDK_20s1447601g001 I 0.691
POPTR_0005s14460 Populus trichocarpa POPTR_0005s14460 I 0.689
POPTR_0005s14470 Populus trichocarpa POPTR_0005s14470 I 0.689
SapurV1A.0230s0260 Salix purpurea SapurV1A.0230s0260 I 0.689
Aquca_015_00090 Aquilegia coerulea Aquca_015_00090 I 0.688
POPTR_0005s14450 Populus trichocarpa POPTR_0005s14450 I 0.687
MTR_0193s0090 Medicago truncatula MTR_0193s0090 I 0.684
SapurV1A.0230s0240 Salix purpurea SapurV1A.0230s0240 I 0.683
Lus10003277.g Linum usitatissimum Lus10003277.g I 0.682
GLYMA18G49670 Glycine max GLYMA18G49670 I 0.682
cassava36364.valid.m1 Manihot esculenta cassava36364.valid.m1 I 0.681
Si038905m.g Setaria italica Si038905m.g I 0.678
Gorai.001G020400 Gossypium raimondii Gorai.001G020400 I 0.678
Aquca_015_00085 Aquilegia coerulea Aquca_015_00085 I 0.675
MTR_4g125520 Medicago truncatula MTR_4g125520 I 0.674
PRUPE_ppa023812mg Prunus persica PRUPE_ppa023812mg I 0.673
GLYMA09G36983 Glycine max GLYMA09G36983 I 0.669
VIT_11s0016g01320 Vitis vinifera VIT_11s0016g01320 I 0.669
ORGLA03G0196700 Oryza glaberrima ORGLA03G0196700 I 0.668
Pm005571 Prunus mume Pm005571 I 0.667
Carubv10022245m.g Capsella rubella Carubv10022245m.g N 0.667
Ca_03154 Cicer arietinum Ca_03154 I 0.665
TCM_037559 Theobroma cacao TCM_037559 I 0.665
Pm027047 Prunus mume Pm027047 I 0.664
PRUPE_ppa024074mg Prunus persica PRUPE_ppa024074mg I 0.664
AMTR_s00024p00224850 Amborella trichopoda AMTR_s00024p00224850 I 0.663
VIT_04s0008g01810 Vitis vinifera VIT_04s0008g01810 I 0.663
Eucgr.C00722 Eucalyptus grandis Eucgr.C00722 I 0.661
Sb01g032770 Sorghum bicolor Sb01g032770 I 0.661