Cagra.25796s0001 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.25796s0001 T286098_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SRM1
M02307_2.00
Arabidopsis thaliana
NNHNATCNN

NNGATNDNN
PBM
Weirauch et al.(2014)
pTH7080
0.677 0.750
SRM1
M07121_2.00
Arabidopsis thaliana
YCTTATCYWHW

WDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a
0.677 0.750
SRM1
M07122_2.00
Arabidopsis thaliana
YCTTATCYWHWWH

DWWDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_col_b
0.677 0.750
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.25796s0001.1.p Myb 10 59
Cagra.25796s0001.1.p Myb 118 163

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Al_scaffold_0006_2242 Arabidopsis lyrata Al_scaffold_0006_2242 N 0.798
SRM1 Arabidopsis thaliana AT5G08520 D 0.677
AT5G23650 Arabidopsis thaliana AT5G23650 N 0.770
Bo2g160810 Brassica oleracea Bo2g160810 N 0.692
Bo7g097510 Brassica oleracea Bo7g097510 I 0.707
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.730
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.688
Bra009699 Brassica rapa Bra009699 I 0.716
Bra029380 Brassica rapa Bra029380 N 0.685
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.666
Cagra.4850s0001 Capsella grandiflora Cagra.4850s0001 N 0.790
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.666
Carubv10003231m.g Capsella rubella Carubv10003231m.g I 0.907
Carubv10027693m.g Capsella rubella Carubv10027693m.g N 0.783
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.672
Thhalv10005383m.g Eutrema salsugineum Thhalv10005383m.g I 0.702
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.677