Cagra.2925s0017 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.2925s0017 T286103_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.729 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2925s0017.1.p Myb 14 61
Cagra.2925s0017.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10001328m.g Capsella rubella Carubv10001328m.g I 0.909
Bo9g175680 Brassica oleracea Bo9g175680 I 0.899
MYB29 Arabidopsis thaliana AT5G07690 I 0.892
Bostr.13129s0197 Boechera stricta Bostr.13129s0197 I 0.892
Thhalv10013952m.g Eutrema salsugineum Thhalv10013952m.g I 0.892
Bra005949 Brassica rapa Bra005949 I 0.877
MYB29 Arabidopsis lyrata fgenesh2_kg.6__738__AT5G07690.1 I 0.876
Bo9g014610 Brassica oleracea Bo9g014610 I 0.875
Bra035929 Brassica rapa Bra035929 I 0.875
Thhalv10004407m.g Eutrema salsugineum Thhalv10004407m.g I 0.875
Bo3g004500 Brassica oleracea Bo3g004500 I 0.869
Bra012961 Brassica rapa Bra012961 I 0.865
Bo7g098590 Brassica oleracea Bo7g098590 I 0.865
MYB76 Arabidopsis thaliana AT5G07700 I 0.853
MYB28 Arabidopsis thaliana AT5G61420 I 0.845
Bostr.26833s0098 Boechera stricta Bostr.26833s0098 I 0.845
Cagra.0542s0036 Capsella grandiflora Cagra.0542s0036 I 0.845
Carubv10027861m.g Capsella rubella Carubv10027861m.g I 0.845
MYB28 Arabidopsis lyrata scaffold_802785.1 I 0.845
MYB76 Arabidopsis lyrata Al_scaffold_0006_698 I 0.836
cassava44039.valid.m1 Manihot esculenta cassava44039.valid.m1 I 0.836
cassava46146.m1 Manihot esculenta cassava46146.m1 I 0.828
Bo2g161590 Brassica oleracea Bo2g161590 I 0.828
Lus10019085.g Linum usitatissimum Lus10019085.g I 0.821
Bra029311 Brassica rapa Bra029311 I 0.820
cassava47112.m1 Manihot esculenta cassava47112.m1 I 0.797
cassava46145.m1 Manihot esculenta cassava46145.m1 I 0.783
Bostr.13129s0196 Boechera stricta Bostr.13129s0196 I 0.773
evm.TU.supercontig_3.239 Carica papaya evm.TU.supercontig_3.239 I 0.760
PK27708.1 Cannabis sativa PK27708.1 I 0.738
Thhalv10008152m.g Eutrema salsugineum Thhalv10008152m.g I 0.733
Bo5g025570 Brassica oleracea Bo5g025570 I 0.733
Bra025666 Brassica rapa Bra025666 I 0.733
ATMYB122 Arabidopsis lyrata fgenesh2_kg.2__1680__AT1G74080.1 I 0.731
Bra015939 Brassica rapa Bra015939 I 0.731
Bo6g118350 Brassica oleracea Bo6g118350 I 0.731
Bostr.7128s0464 Boechera stricta Bostr.7128s0464 I 0.729
MYB51 Arabidopsis thaliana AT1G18570 D 0.729
MYB51 Arabidopsis lyrata fgenesh2_kg.1__2031__AT1G18570.1 I 0.729
Carubv10009563m.g Capsella rubella Carubv10009563m.g I 0.729
Cagra.4153s0023 Capsella grandiflora Cagra.4153s0023 I 0.729
MYB122 Arabidopsis thaliana AT1G74080 I 0.726
Bo2g080900 Brassica oleracea Bo2g080900 I 0.725
Bra031035 Brassica rapa Bra031035 I 0.723
Bo8g104300 Brassica oleracea Bo8g104300 I 0.723
Bra016553 Brassica rapa Bra016553 I 0.721
Bo8g067910 Brassica oleracea Bo8g067910 I 0.721
Bo9g014380 Brassica oleracea Bo9g014380 I 0.719
Bra035954 Brassica rapa Bra035954 I 0.719
PK14811.1 Cannabis sativa PK14811.1 I 0.719
Bra008131 Brassica rapa Bra008131 I 0.715
TCM_014091 Theobroma cacao TCM_014091 I 0.711
Thhalv10018705m.g Eutrema salsugineum Thhalv10018705m.g I 0.711
Carubv10027524m.g Capsella rubella Carubv10027524m.g I 0.709
Bostr.26833s0149 Boechera stricta Bostr.26833s0149 I 0.709
ATMYB34 Arabidopsis lyrata fgenesh2_kg.8__2056__AT5G60890.1 I 0.709
MYB34 Arabidopsis thaliana AT5G60890 I 0.709
Thhalv10004638m.g Eutrema salsugineum Thhalv10004638m.g I 0.709
Bra013000 Brassica rapa Bra013000 I 0.709
Gorai.003G097900 Gossypium raimondii Gorai.003G097900 I 0.707
Bo7g098110 Brassica oleracea Bo7g098110 I 0.706
PK01174.1 Cannabis sativa PK01174.1 I 0.704
Bra029349 Brassica rapa Bra029349 I 0.689
Bo2g161180 Brassica oleracea Bo2g161180 I 0.689
POPTR_0014s11780 Populus trichocarpa POPTR_0014s11780 I 0.684
cassava24756.valid.m1 Manihot esculenta cassava24756.valid.m1 I 0.681
SapurV1A.0180s0510 Salix purpurea SapurV1A.0180s0510 I 0.681
gene12738-v1.0-hybrid Fragaria vesca gene12738-v1.0-hybrid I 0.681
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.680
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.680
Bra009245 Brassica rapa Bra009245 N 0.677
evm.TU.supercontig_28.71 Carica papaya evm.TU.supercontig_28.71 I 0.676
MTR_2g034790 Medicago truncatula MTR_2g034790 I 0.675
Eucgr.G01774 Eucalyptus grandis Eucgr.G01774 I 0.674
Bra029350 Brassica rapa Bra029350 I 0.674
Carubv10020723m.g Capsella rubella Carubv10020723m.g I 0.674
POPTR_0002s19920 Populus trichocarpa POPTR_0002s19920 I 0.672
OS01G0305900 Oryza sativa OS01G0305900 I 0.671
ORUFI01G13920 Oryza rufipogon ORUFI01G13920 I 0.671
OGLUM01G14390 Oryza glumaepatula OGLUM01G14390 I 0.671
cassava17115.m1 Manihot esculenta cassava17115.m1 I 0.671
BGIOSGA003345 Oryza indica BGIOSGA003345 I 0.671
Cla013211 Citrullus lanatus Cla013211 I 0.668
Cucsa.318610 Cucumis sativus Cucsa.318610 I 0.668
GLYMA17G03480 Glycine max GLYMA17G03480 I 0.666
MTR_4g121460 Medicago truncatula MTR_4g121460 I 0.666
VIT_13s0084g00530 Vitis vinifera VIT_13s0084g00530 I 0.664
TCM_011660 Theobroma cacao TCM_011660 I 0.664
Eucgr.C03554 Eucalyptus grandis Eucgr.C03554 I 0.663
SapurV1A.0158s0390 Salix purpurea SapurV1A.0158s0390 I 0.662