Cagra.3160s0003 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.3160s0003 T286105_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB23
M07133_2.00
Arabidopsis thaliana
HCAACWAHHHH

DDDDTWGTTGD
Dap-seq
OMalley et al.(2016)
MYB23_col_a
0.909 1.000
WER
M11047_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01
0.817 0.957
WER
M11048_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2
0.817 0.957
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3160s0003.1.p Myb 14 61
Cagra.3160s0003.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

Invalid Input OrderBy

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action