Cagra.3166s0078 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.3166s0078 T286107_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WER
M11047_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01 		0.909 1.000
WER
M11048_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WEREWOLF_Q2 		0.909 1.000
MYB23
M07133_2.00 		Arabidopsis thaliana
HCAACWAHHHH
DDDDTWGTTGD		 Dap-seq
OMalley et al.(2016)
MYB23_col_a 		0.817 0.957
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3166s0078.1.p Myb 18 65
Cagra.3166s0078.1.p Myb 71 116

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10001990m.g Capsella rubella Carubv10001990m.g I 0.909
Bostr.2902s0211 Boechera stricta Bostr.2902s0211 I 0.909
WER Arabidopsis lyrata fgenesh2_kg.6__1454__AT5G14750.1 I 0.909
Bo2g012170 Brassica oleracea Bo2g012170 I 0.909
Thhalv10014715m.g Eutrema salsugineum Thhalv10014715m.g I 0.909
WER Arabidopsis thaliana AT5G14750 D 0.909
Bo9g165670 Brassica oleracea Bo9g165670 I 0.892
Bra008740 Brassica rapa Bra008740 I 0.892
Bostr.1460s0063 Boechera stricta Bostr.1460s0063 I 0.871
Cagra.3160s0003 Capsella grandiflora Cagra.3160s0003 I 0.817
Bostr.7200s0005 Boechera stricta Bostr.7200s0005 I 0.817
Bra025589 Brassica rapa Bra025589 I 0.817
Carubv10005698m.g Capsella rubella Carubv10005698m.g I 0.817
MYB23 Arabidopsis thaliana AT5G40330 D 0.817
Bra023486 Brassica rapa Bra023486 I 0.811
Eucgr.J02212 Eucalyptus grandis Eucgr.J02212 I 0.806
Thhalv10028340m.g Eutrema salsugineum Thhalv10028340m.g I 0.802
cassava26193.m1 Manihot esculenta cassava26193.m1 I 0.791
Thhalv10005428m.g Eutrema salsugineum Thhalv10005428m.g I 0.791
Pm024725 Prunus mume Pm024725 I 0.786
Bra025311 Brassica rapa Bra025311 I 0.786
TCM_016886 Theobroma cacao TCM_016886 I 0.781
MDP0000578193 Malus domestica MDP0000578193 I 0.776
TCM_012057 Theobroma cacao TCM_012057 I 0.775
Bo7g090950 Brassica oleracea Bo7g090950 I 0.775
SapurV1A.1178s0050 Salix purpurea SapurV1A.1178s0050 I 0.773
PRUPE_ppa010908mg Prunus persica PRUPE_ppa010908mg I 0.770
VIT_17s0000g08480 Vitis vinifera VIT_17s0000g08480 I 0.764
cassava27350.m1 Manihot esculenta cassava27350.m1 I 0.764
Bra039065 Brassica rapa Bra039065 I 0.763
VIT_14s0066g01220 Vitis vinifera VIT_14s0066g01220 I 0.760
MDP0000650225 Malus domestica MDP0000650225 I 0.759
GL1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5000559 I 0.758
GL1 Arabidopsis thaliana AT3G27920 I 0.758
Aquca_025_00333 Aquilegia coerulea Aquca_025_00333 I 0.751
POPTR_0012s08190 Populus trichocarpa POPTR_0012s08190 I 0.750
Aquca_002_00170 Aquilegia coerulea Aquca_002_00170 I 0.748
evm.TU.supercontig_124.57 Carica papaya evm.TU.supercontig_124.57 I 0.747
Carubv10018791m.g Capsella rubella Carubv10018791m.g I 0.742
Cagra.4961s0006 Capsella grandiflora Cagra.4961s0006 I 0.742
Ciclev10017556m.g Citrus clementina Ciclev10017556m.g I 0.741
Gorai.007G001800 Gossypium raimondii Gorai.007G001800 I 0.741
SapurV1A.1404s0020 Salix purpurea SapurV1A.1404s0020 I 0.740
Eucgr.B00373 Eucalyptus grandis Eucgr.B00373 I 0.738
Eucgr.I01791 Eucalyptus grandis Eucgr.I01791 I 0.735
Gorai.012G061800 Gossypium raimondii Gorai.012G061800 I 0.733
POPTR_0015s08680 Populus trichocarpa POPTR_0015s08680 I 0.733
TCM_010360 Theobroma cacao TCM_010360 I 0.726
MDP0000199965 Malus domestica MDP0000199965 I 0.726
Bostr.0556s0467 Boechera stricta Bostr.0556s0467 I 0.718
POPTR_0015s08700 Populus trichocarpa POPTR_0015s08700 I 0.713
TCM_005112 Theobroma cacao TCM_005112 I 0.695
Eucgr.D02390 Eucalyptus grandis Eucgr.D02390 I 0.695
MDP0000915330 Malus domestica MDP0000915330 I 0.695
Gorai.008G126700 Gossypium raimondii Gorai.008G126700 I 0.695
PK14784.1 Cannabis sativa PK14784.1 I 0.695
evm.TU.supercontig_96.57 Carica papaya evm.TU.supercontig_96.57 I 0.695
gene18691-v1.0-hybrid Fragaria vesca gene18691-v1.0-hybrid I 0.695
VIT_15s0046g00170 Vitis vinifera VIT_15s0046g00170 I 0.695
gene32181-v1.0-hybrid Fragaria vesca gene32181-v1.0-hybrid I 0.695
Pm018338 Prunus mume Pm018338 I 0.692
PRUPE_ppa009439mg Prunus persica PRUPE_ppa009439mg I 0.692
30068.m002544 Ricinus communis 30068.m002544 I 0.692
cassava34176.m1 Manihot esculenta cassava34176.m1 I 0.692
MDP0000537324 Malus domestica MDP0000537324 I 0.691
Gorai.004G151000 Gossypium raimondii Gorai.004G151000 I 0.691
Cla011528 Citrullus lanatus Cla011528 I 0.688
VIT_01s0127g00730 Vitis vinifera VIT_01s0127g00730 I 0.686
MDP0000164048 Malus domestica MDP0000164048 I 0.683
POPTR_0003s14420 Populus trichocarpa POPTR_0003s14420 I 0.683
PRUPE_ppa014884mg Prunus persica PRUPE_ppa014884mg I 0.683
POPTR_0001s11100 Populus trichocarpa POPTR_0001s11100 I 0.683
Pm006678 Prunus mume Pm006678 I 0.683
PDK_20s1716541g001 Phoenix dactylifera PDK_20s1716541g001 I 0.683
SapurV1A.0059s0150 Salix purpurea SapurV1A.0059s0150 I 0.683
LjT16O05.150.nd Lotus japonicus LjT16O05.150.nd I 0.682
orange1.1g047269m.g Citrus sinensis orange1.1g047269m.g I 0.680
Ciclev10032713m.g Citrus clementina Ciclev10032713m.g I 0.680
SapurV1A.0013s0160 Salix purpurea SapurV1A.0013s0160 I 0.674
POPTR_0014s09630 Populus trichocarpa POPTR_0014s09630 I 0.674
MDP0000266683 Malus domestica MDP0000266683 I 0.674
Gorai.004G150800 Gossypium raimondii Gorai.004G150800 I 0.673
POPTR_0002s17460 Populus trichocarpa POPTR_0002s17460 I 0.672
SapurV1A.0035s0040 Salix purpurea SapurV1A.0035s0040 I 0.671
Eucgr.C00721 Eucalyptus grandis Eucgr.C00721 I 0.671
cassava7672.valid.m1 Manihot esculenta cassava7672.valid.m1 I 0.671
Eucgr.D01701 Eucalyptus grandis Eucgr.D01701 I 0.670
MTR_8g027345 Medicago truncatula MTR_8g027345 I 0.669
Ca_17627 Cicer arietinum Ca_17627 I 0.666
Gorai.004G130900 Gossypium raimondii Gorai.004G130900 I 0.666
Ciclev10021571m.g Citrus clementina Ciclev10021571m.g I 0.665
orange1.1g040841m.g Citrus sinensis orange1.1g040841m.g I 0.665
orange1.1g025602m.g Citrus sinensis orange1.1g025602m.g I 0.664
Ciclev10009286m.g Citrus clementina Ciclev10009286m.g I 0.664
Cucsa.304110 Cucumis sativus Cucsa.304110 I 0.663
TCM_004509 Theobroma cacao TCM_004509 I 0.663
Eucgr.C00724 Eucalyptus grandis Eucgr.C00724 I 0.663
GLYMA10G35050 Glycine max GLYMA10G35050 I 0.663