CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cagra.3501s0036
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.3501s0036
T286115_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G14600
M01268_2.00
Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN
PBM
Lambert et al.(2019)
pTH11557
0.909
1.000
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.692
0.787
PHL6
M02295_2.00
Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN
PBM
Weirauch et al.(2014)
pTH7071
0.682
0.723
PHL6
M07083_2.00
Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN
Dap-seq
OMalley et al.(2016)
At3g13040_col_b
0.682
0.723
PK26523.1
M01283_2.00
Cannabis sativa
NWHATTCYNN
NNRGAATDWN
PBM
Lambert et al.(2019)
pTH11304
0.673
0.766
KAN1
M00878_2.00
Arabidopsis thaliana
NNRTNBNN
NNVNAYNN
PBM
Franco-Zorrilla et al.(2014)
KAN1
0.667
0.723
KAN1
M02308_2.00
Arabidopsis thaliana
NDNDTAHNHN
NDNDTAHNHN
PBM
Weirauch et al.(2014)
pTH7135
0.667
0.723
KAN2
M07018_2.00
Arabidopsis thaliana
HHHNDWATATTCTYH
DRAGAATATWHNDDD
Dap-seq
OMalley et al.(2016)
KAN2_col_a
0.667
0.723
KAN2
M07019_2.00
Arabidopsis thaliana
NWWTATTCYYH
DRRGAATAWWN
Dap-seq
OMalley et al.(2016)
KAN2_colamp_a
0.667
0.723
AT2G38300
M07056_2.00
Arabidopsis thaliana
WAHATTCYHTH
DADRGAATDTW
Dap-seq
OMalley et al.(2016)
AT2G38300_col_a
0.663
0.745
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.661
0.766
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.3501s0036.1.p
Myb
25
76
RLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
633 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy