Cagra.4093s0003 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.4093s0003 T286135_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.853 0.971
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.853 0.971
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.778 0.871
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.764 0.856
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.701 0.813
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.670 0.791
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4093s0003.1.p Myb 31 77
Cagra.4093s0003.1.p Myb 83 129
Cagra.4093s0003.1.p Myb 135 179

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.909
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.853
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.853
Bo3g171130 Brassica oleracea Bo3g171130 I 0.839
Bra034531 Brassica rapa Bra034531 I 0.839
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.837
Bo7g115810 Brassica oleracea Bo7g115810 I 0.826
Bo1g010040 Brassica oleracea Bo1g010040 I 0.823
Bra011376 Brassica rapa Bra011376 I 0.823
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.810
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.810
Bra037045 Brassica rapa Bra037045 I 0.797
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.794
29794.m003447 Ricinus communis 29794.m003447 I 0.789
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.789
Ca_14925 Cicer arietinum Ca_14925 I 0.784
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.779
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.778
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.778
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.775
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.773
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.773
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.770
MDP0000295807 Malus domestica MDP0000295807 I 0.769
mgf008601m Mimulus guttatus mgf008601m I 0.765
PK12011.1 Cannabis sativa PK12011.1 D 0.764
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.760
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.760
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.759
TCM_047091 Theobroma cacao TCM_047091 I 0.759
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.757
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.757
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.757
Cla022565 Citrullus lanatus Cla022565 I 0.757
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.756
MDP0000179225 Malus domestica MDP0000179225 I 0.756
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.754
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.754
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.753
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.744
Cla023357 Citrullus lanatus Cla023357 I 0.739
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.739
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.739
PK22174.1 Cannabis sativa PK22174.1 I 0.732
Ca_01884 Cicer arietinum Ca_01884 I 0.730
Pm005124 Prunus mume Pm005124 I 0.725
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.725
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.722
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.720
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.717
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.717
mgf006384m Mimulus guttatus mgf006384m I 0.716
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.715
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.714
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.714
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.713
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.708
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.707
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.707
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.704
SELMODRAFT_411844 Selaginella moellendorffii SELMODRAFT_411844 I 0.703
Bra008956 Brassica rapa Bra008956 I 0.701
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.701
Bo9g171130 Brassica oleracea Bo9g171130 I 0.701
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.701
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.701
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.700
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.700
OBART01G08110 Oryza barthii OBART01G08110 I 0.700
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.700
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.698
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.698
OS12G0238000 Oryza sativa OS12G0238000 I 0.694
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.694
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.694
OB12G16480 Oryza brachyantha OB12G16480 I 0.694
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.694
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.693
F775_05724 Aegilops tauschii F775_05724 I 0.687
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.684
OB01G18340 Oryza brachyantha OB01G18340 I 0.683
Bo3g179620 Brassica oleracea Bo3g179620 I 0.681
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.681
Bo3g007070 Brassica oleracea Bo3g007070 I 0.681
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.680
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.679
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.676
MYB3R-2 Oryza sativa OS01G0841500 I 0.672
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.672
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.672
Q948S6_TOBAC Nicotiana tabacum Q948S6_TOBAC D 0.670
Pm018007 Prunus mume Pm018007 I 0.670
Bra006102 Brassica rapa Bra006102 I 0.669
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.663
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.663
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.662
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.661
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.661