Cagra.5789s0001 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.5789s0001 T286173_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.5789s0001.1.p Myb 1 24

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30128.m008990 Ricinus communis 30128.m008990 N 0.721
30147.m014198 Ricinus communis 30147.m014198 N 0.697
AMTR_s00009p00257950 Amborella trichopoda AMTR_s00009p00257950 N 0.748
AMTR_s00029p00050350 Amborella trichopoda AMTR_s00029p00050350 N 0.662
AMTR_s00057p00069720 Amborella trichopoda AMTR_s00057p00069720 N 0.732
AMTR_s00087p00039380 Amborella trichopoda AMTR_s00087p00039380 N 0.716
AMTR_s00133p00075670 Amborella trichopoda AMTR_s00133p00075670 N 0.680
MYB60 Arabidopsis thaliana AT1G08810 D 0.694
MYB3 Arabidopsis thaliana AT1G22640 D 0.798
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.697
ATMYB16 Arabidopsis thaliana AT5G15310 I 0.747
BGIOSGA010548 Oryza indica BGIOSGA010548 N 0.745
Bo4g198650 Brassica oleracea Bo4g198650 N 0.740
Bo8g104180 Brassica oleracea Bo8g104180 N 0.750
Bostr.13129s0196 Boechera stricta Bostr.13129s0196 I 0.806
Bra024685 Brassica rapa Bra024685 N 0.719
Cagra.0876s0043 Capsella grandiflora Cagra.0876s0043 N 0.897
cassava15703.m1 Manihot esculenta cassava15703.m1 N 0.859
cassava2662.m1 Manihot esculenta cassava2662.m1 N 0.782
cassava45648.m1 Manihot esculenta cassava45648.m1 N 0.837
Ca_10215 Cicer arietinum Ca_10215 N 0.812
chr1.CM0600.120.nd Lotus japonicus chr1.CM0600.120.nd N 0.853
chr5.CM0071.390.nd Lotus japonicus chr5.CM0071.390.nd N 0.795
Ciclev10023519m.g Citrus clementina Ciclev10023519m.g N 0.721
CM0385.220.nd Lotus japonicus CM0385.220.nd N 0.845
Cucsa.051050 Cucumis sativus Cucsa.051050 I 0.693
Eucgr.B03766 Eucalyptus grandis Eucgr.B03766 N 0.841
evm.TU.supercontig_1.55 Carica papaya evm.TU.supercontig_1.55 N 0.725
evm.TU.supercontig_34.3 Carica papaya evm.TU.supercontig_34.3 N 0.741
e_gw1.1.4.1 Physcomitrella patens e_gw1.1.4.1 N 0.755
F775_20859 Aegilops tauschii F775_20859 N 0.672
F775_42755 Aegilops tauschii F775_42755 N 0.792
GLYMA0041S00310 Glycine max GLYMA0041S00310 I 0.705
GLYMA05G03780 Glycine max GLYMA05G03780 I 0.697
GLYMA09G04370 Glycine max GLYMA09G04370 I 0.749
GLYMA14G10483 Glycine max GLYMA14G10483 I 0.691
GLYMA16G16170 Glycine max GLYMA16G16170 N 0.682
Gorai.001G024300 Gossypium raimondii Gorai.001G024300 I 0.691
Gorai.001G239000 Gossypium raimondii Gorai.001G239000 I 0.687
Gorai.008G086400 Gossypium raimondii Gorai.008G086400 I 0.801
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I 0.747
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.740
GRMZM2G051528 Zea mays GRMZM2G051528 I 0.730
LjSGA_014958.1 Lotus japonicus LjSGA_014958.1 N 0.879
LjSGA_034303.1 Lotus japonicus LjSGA_034303.1 N 0.842
LjSGA_057038.1 Lotus japonicus LjSGA_057038.1 N 0.845
LjSGA_057664.1 Lotus japonicus LjSGA_057664.1 N 0.866
LjSGA_064890.1.1 Lotus japonicus LjSGA_064890.1.1 N 0.678
MDP0000158409 Malus domestica MDP0000158409 N 0.694
MDP0000413041 Malus domestica MDP0000413041 N 0.741
MDP0000879675 Malus domestica MDP0000879675 N 0.728
MDP0000911051 Malus domestica MDP0000911051 N 0.740
mg021480m Mimulus guttatus mg021480m N 0.723
mgf017705m Mimulus guttatus mgf017705m N 0.753
mgf018056m Mimulus guttatus mgf018056m N 0.839
mgf020736m Mimulus guttatus mgf020736m N 0.755
mgf021965m Mimulus guttatus mgf021965m N 0.664
mgf023771m Mimulus guttatus mgf023771m N 0.854
MLOC_12474 Hordeum vulgare MLOC_12474 N 0.719
MLOC_23224 Hordeum vulgare MLOC_23224 N 0.585
MLOC_39554 Hordeum vulgare MLOC_39554 I 0.848
MLOC_71332 Hordeum vulgare MLOC_71332 N 0.738
MTR_1g087540 Medicago truncatula MTR_1g087540 N 0.819
OB06G28240 Oryza brachyantha OB06G28240 N 0.841
OLONG_025203 Oryza longistaminata OLONG_025203 N 0.694
orange1.1g019307m.g Citrus sinensis orange1.1g019307m.g I 0.694
ORGLA02G0219000 Oryza glaberrima ORGLA02G0219000 N 0.809
OS04G0517100 Oryza sativa OS04G0517100 N 0.743
OS05G0132700 Oryza sativa OS05G0132700 N 0.668
OS05G0350900 Oryza sativa OS05G0350900 N 0.698
Pavir.Db00878 Panicum virgatum Pavir.Db00878 N 0.841
Pavir.Eb00654 Panicum virgatum Pavir.Eb00654 I 0.668
Pavir.Eb02286 Panicum virgatum Pavir.Eb02286 N 0.845
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.738
Pavir.Ia03786 Panicum virgatum Pavir.Ia03786 N 0.672
Pavir.J11191 Panicum virgatum Pavir.J11191 N 0.664
Pavir.J14839 Panicum virgatum Pavir.J14839 N 0.845
Pavir.J25377 Panicum virgatum Pavir.J25377 N 0.843
PDK_20s1922781g001 Phoenix dactylifera PDK_20s1922781g001 N 0.909
PGSC0003DMG400014550 Solanum tuberosum PGSC0003DMG400014550 I 0.728
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N 0.815
PK00358.1 Cannabis sativa PK00358.1 N 0.758
PK15577.1 Cannabis sativa PK15577.1 N 0.715
PK21717.1 Cannabis sativa PK21717.1 N 0.801
PK22972.1 Cannabis sativa PK22972.1 N 0.675
Pm000007 Prunus mume Pm000007 N 0.854
Pm015551 Prunus mume Pm015551 N 0.669
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I 0.854
POPTR_0017s10780 Populus trichocarpa POPTR_0017s10780 N 0.853
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I 0.690
SapurV1A.0021s0930 Salix purpurea SapurV1A.0021s0930 I 0.690
SapurV1A.0876s0040 Salix purpurea SapurV1A.0876s0040 I 0.687
SapurV1A.0890s0050 Salix purpurea SapurV1A.0890s0050 I 0.691
SapurV1A.1876s0010 Salix purpurea SapurV1A.1876s0010 N 0.698
SapurV1A.3377s0010 Salix purpurea SapurV1A.3377s0010 I 0.691
Solyc03g098270.1 Solanum lycopersicum Solyc03g098270.1 N 0.719
TCM_041010 Theobroma cacao TCM_041010 I 0.841
Traes_3AL_F09C7CA19 Triticum aestivum Traes_3AL_F09C7CA19 N 0.738
Traes_3DL_D9A29948B Triticum aestivum Traes_3DL_D9A29948B N 0.738
Traes_5AS_D238844BB Triticum aestivum Traes_5AS_D238844BB N 0.753
Traes_6AL_C0A2B4F041 Triticum aestivum Traes_6AL_C0A2B4F041 N 0.712
Traes_7AS_ADDEF000C Triticum aestivum Traes_7AS_ADDEF000C N 0.828
Traes_7AS_FD974A17F Triticum aestivum Traes_7AS_FD974A17F N 0.841
Traes_7DS_76515C538 Triticum aestivum Traes_7DS_76515C538 N 0.861
TRIUR3_33467 Triticum urartu TRIUR3_33467 N 0.663