CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.6652s0005
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.6652s0005
T286183_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.782
0.882
PK21166.1
M01281_2.00
Cannabis sativa
HACCWAMY
RKTWGGTD
PBM
Lambert et al.(2019)
pTH11255
0.753
0.892
MYB99
M07151_2.00
Arabidopsis thaliana
NYYYACCWAMYHH
DDRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB99_col_a
0.722
0.774
MYB99
M07152_2.00
Arabidopsis thaliana
YHYACCTAMYH
DRKTAGGTRDR
Dap-seq
OMalley et al.(2016)
MYB99_colamp_a
0.722
0.774
MYB61
M07002_2.00
Arabidopsis thaliana
HNYAMCHACCDNHNH
DNDNHGGTDGKTRND
Dap-seq
OMalley et al.(2016)
MYB61_col_a
0.667
0.667
MYB61
M07003_2.00
Arabidopsis thaliana
NHNYACCWAMCDH
DHGKTWGGTRNDN
Dap-seq
OMalley et al.(2016)
MYB61_colamp_a
0.667
0.667
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.6652s0005.1.p
Myb
14
61
KGPWTVEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNYL
Cagra.6652s0005.1.p
Myb
67
112
RGLLSHDEEQLVIDLHAHLGNKWSKIASRLPGRTDNEIKNHWNTHI
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
415 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy