CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10001147m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10001147m.g
T286210_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT
AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.898
0.957
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.898
0.957
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW
WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.898
0.957
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN
NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.797
0.826
OS08G0157600
M02330_2.00
Oryza sativa
DNRTATCHN
NDGATAYNH
PBM
Weirauch et al.(2014)
pTH7793
0.788
0.870
LHY
M06997_2.00
Arabidopsis thaliana
NWAAATATCT
AGATATTTWN
Dap-seq
OMalley et al.(2016)
LHY1_col_a
0.779
0.848
LHY
M06998_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LHY1_colamp_a
0.779
0.848
CCA1
M00875_2.00
Arabidopsis thaliana
NDNRWATCN
NGATWYNHN
PBM
Franco-Zorrilla et al.(2014)
CCA1
0.749
0.804
CCA1
M11039_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CCA1_Q5
0.749
0.804
RVE5
M01079_2.00
Arabidopsis thaliana
NWAATATCHN
NDGATATTWN
PBM
Sullivan et al.(2014)
pTH7138
0.734
0.674
RVE5
M07100_2.00
Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At4g01280_col_a
0.734
0.674
RVE5
M07101_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a
0.734
0.674
RVE7
M01069_2.00
Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN
PBM
Sullivan et al.(2014)
pTH7081
0.714
0.739
RVE7
M02286_2.00
Arabidopsis thaliana
NDARTATCH
DGATAYTHN
PBM
Weirauch et al.(2014)
pTH7277
0.714
0.739
RVE7L
M07071_2.00
Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN
Dap-seq
OMalley et al.(2016)
AT3G10113_col_a
0.714
0.739
RVE7
M07008_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
EPR1_colamp_a
0.714
0.739
RVE7
M07009_2.00
Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN
Dap-seq
OMalley et al.(2016)
EPR1_col
0.714
0.739
mybG
M02319_2.00
Dictyostelium discoideum
WAATATCT
AGATATTW
PBM
Weirauch et al.(2014)
pTH5362
0.693
0.652
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10001147m
Myb
55
100
RERWTDDEHKKFVEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFF
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
306 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy