Carubv10001695m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10001695m.g T286223_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G05790
M07119_2.00
Arabidopsis thaliana
HWYMTTATCHWNWHH

DDWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g05790_col_a
0.898 0.989
AT3G11280
M01075_2.00
Arabidopsis thaliana
NNTTATCNNN

NNNGATAANN
PBM
Sullivan et al.(2014)
pTH7245
0.740 0.904
AT3G11280
M07074_2.00
Arabidopsis thaliana
DWDWDGATAAKRWW

WWYMTTATCHWHWH
Dap-seq
OMalley et al.(2016)
At3g11280_col_a
0.740 0.904
AT3G11280
M07075_2.00
Arabidopsis thaliana
NNWNNDGATAAGRWHDNN

NNHDWYCTTATCHNNWNN
Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a
0.740 0.904
AT5G58900
M07146_2.00
Arabidopsis thaliana
HHWWYCTTATCYWHW

WDWRGATAAGRWWDD
Dap-seq
OMalley et al.(2016)
At5g58900_col_a
0.687 0.766
AT5G58900
M07147_2.00
Arabidopsis thaliana
HWYMTTATCHWNWWH

DWWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a
0.687 0.766
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001695m Myb 130 177

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.5131s0007 Capsella grandiflora Cagra.5131s0007 I 0.909
Bostr.13129s0394 Boechera stricta Bostr.13129s0394 I 0.898
scaffold_600551.1 Arabidopsis lyrata scaffold_600551.1 I 0.898
AT5G05790 Arabidopsis thaliana AT5G05790 D 0.898
Thhalv10014370m.g Eutrema salsugineum Thhalv10014370m.g I 0.871
Bra009134 Brassica rapa Bra009134 I 0.842
Bo9g176900 Brassica oleracea Bo9g176900 I 0.842
TCM_042604 Theobroma cacao TCM_042604 I 0.785
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.740
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.740
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.740
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.740
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.740
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.730
Bra034173 Brassica rapa Bra034173 I 0.725
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.725
Bra034853 Brassica rapa Bra034853 I 0.725
Bo5g136680 Brassica oleracea Bo5g136680 I 0.713
Bo1g141120 Brassica oleracea Bo1g141120 I 0.708
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.703
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.698
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.698
Ca_12513 Cicer arietinum Ca_12513 I 0.689
Bra002610 Brassica rapa Bra002610 I 0.687
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.687
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.687
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.687
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.684
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.683
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.683
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.682
Bo3g018460 Brassica oleracea Bo3g018460 I 0.677
Bra006741 Brassica rapa Bra006741 I 0.677
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.677
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.674
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.674
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.672
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.672
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.671
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.669
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.669
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.669
Pm018878 Prunus mume Pm018878 I 0.669
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.666
mgf010347m Mimulus guttatus mgf010347m I 0.666
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.662
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.661